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金属组学与蛋白质组学相结合以解读与金属相关的环境问题。

Metallomics integrated with proteomics in deciphering metal-related environmental issues.

作者信息

González-Fernández Macarena, García-Barrera Tamara, Arias-Borrego Ana, Jurado Juan, Pueyo Carmen, López-Barea Juan, Gómez-Ariza Jose L

机构信息

Department of Chemistry and Material Science, Faculty of Experimental Studies, University of Huelva, Campus de El Carmen, 21007 Huelva, Spain.

出版信息

Biochimie. 2009 Oct;91(10):1311-7. doi: 10.1016/j.biochi.2009.07.006. Epub 2009 Jul 17.

Abstract

The present work shows the possibilities of metallomics to characterize metal-linking proteins in Mus Musculus that could be used in environmental assessment. The laboratory mouse M. musculus is used as reference of gene/protein sequence databases to address methodological approaches based on changes in transcripts regulation, proteins expression and metalloproteins profiles in the environmental bioindicator Mus spretus that has been demonstrated to be genetically homologous to M. Musculus. A metallomic approach using size exclusion chromatography with inductively coupled plasma-mass spectrometry detection (SEC-ICP-MS) was applied to cytosolic extracts from different M. musculus organs: lung, liver, spleen, kidney, brain, testicle, hearth and muscle. The resulting profiles of metallobiomolecules revealed the presence of a Cu-binding fraction in the 7-10 kDa range which was not present in the other tissues, can be associated to low molecular mass metallothionein-like proteins. The application of reverse phase chromatography with ICP-MS detection to this fraction gives two peaks that have been isolated for later identification by tandem mass spectrometry. The mass balance of copper evaluated by ICP-MS analysis of the digested brain fractions isolated by SEC and RP chromatography reveals good recoveries of the separations. The application of 2-DE to both crude brain extract and SEC fraction (7-10 kDa) reveals the considerably reduction of the number of proteins confirming that a good purification has been attained by SEC. This integration of metallomics with proteomics and transcriptomics can be useful in further studies involving the free-living mouse M. spretus for assessment of environmental issues.

摘要

本研究展示了金属组学在表征小家鼠中可用于环境评估的金属连接蛋白方面的可能性。实验室小鼠小家鼠被用作基因/蛋白质序列数据库的参考,以探讨基于环境生物指示物种西班牙小鼠中转录调控、蛋白质表达和金属蛋白谱变化的方法,西班牙小鼠已被证明与小家鼠在基因上同源。采用尺寸排阻色谱结合电感耦合等离子体质谱检测(SEC-ICP-MS)的金属组学方法应用于小家鼠不同器官(肺、肝、脾、肾、脑、睾丸、心脏和肌肉)的胞质提取物。所得的金属生物分子谱显示,在7-10 kDa范围内存在一个铜结合组分,该组分在其他组织中不存在,可能与低分子量金属硫蛋白样蛋白有关。对该组分应用反相色谱结合ICP-MS检测得到两个峰,已将其分离以便后续通过串联质谱进行鉴定。通过对SEC和RP色谱分离得到的消化脑部分进行ICP-MS分析评估铜的质量平衡,结果表明分离的回收率良好。对粗脑提取物和SEC组分(7-10 kDa)均应用二维电泳,结果显示蛋白质数量大幅减少,证实SEC已实现良好的纯化。金属组学与蛋白质组学和转录组学的这种整合在涉及自由生活的西班牙小鼠以评估环境问题的进一步研究中可能会有用。

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