• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

评估单个氨基酸取代对蛋白质天然态和变性态的影响。

Evaluating the effects of a single amino acid substitution on both the native and denatured states of a protein.

作者信息

Lin T Y, Kim P S

机构信息

Department of Biology, Massachusetts Institute of Technology, Nine Cambridge Center 02142.

出版信息

Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10573-7. doi: 10.1073/pnas.88.23.10573.

DOI:10.1073/pnas.88.23.10573
PMID:1961723
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC52971/
Abstract

For proteins that contain a disulfide bond, stability is linked thermodynamically to thiol-disulfide exchange. We use this relationship to obtain unfolding free energies for both the reduced and oxidized forms of Escherichia coli thioredoxin from measurements of the effective concentrations of protein thiols. We then evaluate the effect of an amino acid substitution on disulfide bond formation in both the native and denatured states of the protein. Although the Pro-34----Ser substitution in thioredoxin results in a decrease of the effective concentration of protein thiols in the native state, the effective concentration increases in the denatured state. The net effect of the amino acid substitution is to increase the stability of reduced thioredoxin by approximately 2.4 kcal/mol, whereas the stability of the oxidized protein remains the same. By assuming a two-state unfolding equilibrium and a mutation free energy of -7.7 kcal/mol for the Pro-34----Ser substitution in the reduced, urea-unfolded state (based on estimates of solvation and entropic changes), we obtained relative free energies for the native and denatured states of the mutant and wild-type proteins, in both the reduced and oxidized forms.

摘要

对于含有二硫键的蛋白质,其稳定性在热力学上与硫醇-二硫键交换相关。我们利用这种关系,通过测量蛋白质硫醇的有效浓度,获得了大肠杆菌硫氧还蛋白还原态和氧化态的解折叠自由能。然后,我们评估了氨基酸取代对蛋白质天然态和变性态中二硫键形成的影响。尽管硫氧还蛋白中Pro-34突变为Ser导致天然态下蛋白质硫醇的有效浓度降低,但在变性态下有效浓度增加。氨基酸取代的净效应是使还原态硫氧还蛋白的稳定性增加约2.4千卡/摩尔,而氧化态蛋白质的稳定性保持不变。通过假设在还原的、尿素变性状态下Pro-34突变为Ser的双态解折叠平衡和突变自由能为-7.7千卡/摩尔(基于溶剂化和熵变的估计),我们获得了突变型和野生型蛋白质在还原态和氧化态下天然态和变性态的相对自由能。

相似文献

1
Evaluating the effects of a single amino acid substitution on both the native and denatured states of a protein.评估单个氨基酸取代对蛋白质天然态和变性态的影响。
Proc Natl Acad Sci U S A. 1991 Dec 1;88(23):10573-7. doi: 10.1073/pnas.88.23.10573.
2
Escherichia coli thioredoxin folds into two compact forms of different stability to urea denaturation.大肠杆菌硫氧还蛋白折叠成两种对尿素变性具有不同稳定性的紧密形式。
Biochemistry. 1989 Apr 18;28(8):3211-20. doi: 10.1021/bi00434a015.
3
Natural selection for kinetic stability is a likely origin of correlations between mutational effects on protein energetics and frequencies of amino acid occurrences in sequence alignments.对动力学稳定性的自然选择可能是序列比对中突变对蛋白质能量学的影响与氨基酸出现频率之间相关性的一个起源。
J Mol Biol. 2006 Oct 6;362(5):966-78. doi: 10.1016/j.jmb.2006.07.065. Epub 2006 Jul 31.
4
Effects of buried charged groups on cysteine thiol ionization and reactivity in Escherichia coli thioredoxin: structural and functional characterization of mutants of Asp 26 and Lys 57.埋藏的带电基团对大肠杆菌硫氧还蛋白中半胱氨酸硫醇离子化及反应活性的影响:天冬氨酸26和赖氨酸57突变体的结构与功能表征
Biochemistry. 1997 Mar 4;36(9):2622-36. doi: 10.1021/bi961801a.
5
G33D mutant thioredoxin primarily affects the kinetics of reaction with thioredoxin reductase. Probing the structure of the mutant protein.G33D突变型硫氧还蛋白主要影响与硫氧还蛋白还原酶反应的动力学。对突变蛋白的结构进行探测。
Biochemistry. 1999 Nov 23;38(47):15508-13. doi: 10.1021/bi9907678.
6
Replacement of proline-76 with alanine eliminates the slowest kinetic phase in thioredoxin folding.将脯氨酸-76替换为丙氨酸可消除硫氧还蛋白折叠过程中最慢的动力学阶段。
Biochemistry. 1987 Oct 20;26(21):6765-74. doi: 10.1021/bi00395a028.
7
Urea dependence of thiol-disulfide equilibria in thioredoxin: confirmation of the linkage relationship and a sensitive assay for structure.硫氧还蛋白中硫醇-二硫键平衡的尿素依赖性:连接关系的确认及结构的灵敏检测法
Biochemistry. 1989 Jun 13;28(12):5282-7. doi: 10.1021/bi00438a054.
8
Thermodynamics of replacing an alpha-helical Pro residue in the P40S mutant of Escherichia coli thioredoxin.大肠杆菌硫氧还蛋白P40S突变体中α-螺旋脯氨酸残基置换的热力学
Protein Sci. 1999 Nov;8(11):2455-9. doi: 10.1110/ps.8.11.2455.
9
Equilibrium and kinetic measurements of the conformational transition of reduced thioredoxin.
Biochemistry. 1987 Mar 10;26(5):1406-11. doi: 10.1021/bi00379a029.
10
Thermodynamic effects of proline introduction on protein stability.脯氨酸引入对蛋白质稳定性的热力学影响。
Proteins. 2007 Feb 1;66(2):480-91. doi: 10.1002/prot.21215.

引用本文的文献

1
Energetically significant networks of coupled interactions within an unfolded protein.伸展蛋白质内能量显著的耦合相互作用网络。
Proc Natl Acad Sci U S A. 2014 Aug 19;111(33):12079-84. doi: 10.1073/pnas.1402054111. Epub 2014 Aug 6.
2
Disease mutations in the ryanodine receptor N-terminal region couple to a mobile intersubunit interface.钙释放通道 Ryanodine 受体 N 端区域的疾病突变与可移动的亚基间界面偶联。
Nat Commun. 2013;4:1506. doi: 10.1038/ncomms2501.
3
Contributions of distinct quaternary contacts to cooperative operator binding by Mnt repressor.不同四级接触对Mnt阻遏物协同操纵子结合的贡献。
Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2301-5. doi: 10.1073/pnas.041612198. Epub 2001 Feb 13.
4
Novel disulfide engineering in human carbonic anhydrase II using the PAIRWISE side-chain geometry database.利用成对侧链几何数据库对人碳酸酐酶II进行新型二硫键工程改造。
Protein Sci. 2000 Apr;9(4):776-85. doi: 10.1110/ps.9.4.776.
5
The CXXC motif: imperatives for the formation of native disulfide bonds in the cell.CXXC 基序:细胞中天然二硫键形成的必要条件。
EMBO J. 1996 Jun 3;15(11):2659-67.
6
Unnatural amino acid packing mutants of Escherichia coli thioredoxin produced by combined mutagenesis/chemical modification techniques.通过联合诱变/化学修饰技术产生的大肠杆菌硫氧还蛋白的非天然氨基酸包装突变体。
Protein Sci. 1993 Mar;2(3):395-403. doi: 10.1002/pro.5560020311.

本文引用的文献

1
Affinities of amino acid side chains for solvent water.氨基酸侧链与溶剂水的亲和性。
Biochemistry. 1981 Feb 17;20(4):849-55. doi: 10.1021/bi00507a030.
2
An empirical approach to protein conformation stability and flexibility.一种研究蛋白质构象稳定性和灵活性的实证方法。
Biopolymers. 1983 Jan;22(1):49-58. doi: 10.1002/bip.360220110.
3
Entropic contributions to rate accelerations in enzymic and intramolecular reactions and the chelate effect.熵对酶促反应和分子内反应速率加速的贡献以及螯合效应。
Proc Natl Acad Sci U S A. 1971 Aug;68(8):1678-83. doi: 10.1073/pnas.68.8.1678.
4
Determination and analysis of urea and guanidine hydrochloride denaturation curves.尿素和盐酸胍变性曲线的测定与分析。
Methods Enzymol. 1986;131:266-80. doi: 10.1016/0076-6879(86)31045-0.
5
Measurement of thiol-disulfide interchange reactions and thiol pKa values.硫醇-二硫化物交换反应及硫醇pKa值的测定
Methods Enzymol. 1987;143:129-40. doi: 10.1016/0076-6879(87)43023-1.
6
Intramolecular disulfide loop formation in a peptide containing two cysteines.在含有两个半胱氨酸的肽中形成分子内二硫键环。
Biochemistry. 1987 Feb 10;26(3):688-94. doi: 10.1021/bi00377a005.
7
Enhanced protein thermostability from site-directed mutations that decrease the entropy of unfolding.通过定点突变降低解折叠熵来增强蛋白质热稳定性。
Proc Natl Acad Sci U S A. 1987 Oct;84(19):6663-7. doi: 10.1073/pnas.84.19.6663.
8
Accessible surface areas as a measure of the thermodynamic parameters of hydration of peptides.可及表面积作为肽水合热力学参数的一种度量。
Proc Natl Acad Sci U S A. 1987 May;84(10):3086-90. doi: 10.1073/pnas.84.10.3086.
9
Contribution of hydrophobic interactions to protein stability.疏水相互作用对蛋白质稳定性的贡献。
Nature. 1988 Jun 23;333(6175):784-6. doi: 10.1038/333784a0.
10
Replacement of proline-76 with alanine eliminates the slowest kinetic phase in thioredoxin folding.将脯氨酸-76替换为丙氨酸可消除硫氧还蛋白折叠过程中最慢的动力学阶段。
Biochemistry. 1987 Oct 20;26(21):6765-74. doi: 10.1021/bi00395a028.