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利用随机扩增多态性DNA标记评估不同基因型甘蓝型油菜的遗传多样性

Evaluation of genetic diversity among different genotypes of Brassica napus using random amplified polymorphic DNA markers.

作者信息

Fazeli E, Shahriari F, Samizadeh H, Bagheri A, Farsi M

机构信息

Department of Biotechnology, Ferdowsi University of Mashhad, Iran.

出版信息

Pak J Biol Sci. 2008 Dec 1;11(23):2629-33. doi: 10.3923/pjbs.2008.2629.2633.

Abstract

In current research, genetic relationships among rapeseed genotypes from several geographical origins including France, Canada, Germany, Iran, Hungary, Denmark, Australia and America were evaluated using RAPD markers. Among generated 86 bands, 80 different polymorphic bands were obtained using 9 random primers. Diversity Index (DI) or Polymorphism Information Content (PIC) was varied from 0.29 to 0.48, showed a relatively high potential of primers among studied genotypes. Dice similarity coefficient between genotypes was calculated using Nei and Li formula. Maximum (0.91) and minimum (0.42) similarity coefficients were observed between Bristol and Amber genotypes, consul and express, respectively. Cluster analysis based on dice similarity coefficient was also carried out. Base on the cluster analysis, genotypes were grouped into five main clusters. Results showed that genotypes with same geographical origin were genetically different. Therefore, geographical origins of genotypes cannot be used as a base to cross parent to obtain high heterosis and it must be carried out by exact genetic studies. Results confirmed that RAPD is a simple, cheap and fast method for evaluation of genetic diversity of Brassica napus.

摘要

在当前研究中,利用随机扩增多态性DNA(RAPD)标记评估了来自法国、加拿大、德国、伊朗、匈牙利、丹麦、澳大利亚和美国等几个地理来源的油菜基因型之间的遗传关系。在产生的86条带中,使用9条随机引物获得了80条不同的多态性条带。多样性指数(DI)或多态性信息含量(PIC)在0.29至0.48之间变化,表明在所研究的基因型中引物具有相对较高的潜力。使用Nei和Li公式计算基因型之间的Dice相似系数。在布里斯托尔和琥珀基因型、领事和快车基因型之间分别观察到最大(0.91)和最小(0.42)相似系数。还基于Dice相似系数进行了聚类分析。基于聚类分析,基因型被分为五个主要聚类。结果表明,具有相同地理来源的基因型在遗传上是不同的。因此,不能将基因型的地理来源作为杂交亲本以获得高杂种优势的基础,而必须通过精确的遗传研究来进行。结果证实,RAPD是一种评估甘蓝型油菜遗传多样性的简单、廉价且快速的方法。

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