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核酶:酶促反应单底物、双中间体可逆反应机制的解析解

Ribozymes: analytical solution of the one-substrate, two-intermediate reversible scheme for enzyme reactions.

作者信息

Toti Paolo, Sbordone Ludovico, Sbordone Carolina, Bauer Carlo

机构信息

Unità di Biochimica, Dipartimento di Biologia, Università di Pisa, 56127 Pisa, Italy.

出版信息

J Biol Phys. 2006 Dec;32(6):473-88. doi: 10.1007/s10867-006-9030-z. Epub 2007 Jan 27.

Abstract

The paper presents a kinetic analysis of a reversible enzymatic reaction Sright arrow over left arrowP involving two intermediate compounds under the condition E >> S + P. For the case of mono-exponential behavior, we derive an equation for k (obs) as a function of E, which emphasizes the pitfalls of oversimplifying kinetic schemes (such as the Michaelis-Menten model) for ribozyme studies. This novel apparent rate constant, which has been arrived at through mechanistic considerations, is analyzed, and the characteristic parameters obtained. The equation, which seems to fit experimental data better than conventional approximations, is used to analyze a single turnover study on an ADC1 ribozyme drawn from hepatitis delta virus RNA. The microscopic kinetic constants for such enzyme are evaluated and its mono-exponential behavior verified.

摘要

本文在E >> S + P的条件下,对涉及两种中间化合物的可逆酶促反应S⇌P进行了动力学分析。对于单指数行为的情况,我们推导了k(obs)作为E函数的方程,该方程强调了在核酶研究中过度简化动力学方案(如米氏模型)的缺陷。通过机理分析得到了这个新的表观速率常数,并对其进行了分析,得到了特征参数。该方程似乎比传统近似方法更能拟合实验数据,用于分析来自丁型肝炎病毒RNA的ADC1核酶的单周转研究。评估了这种酶的微观动力学常数,并验证了其单指数行为。

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Single-molecule Michaelis-Menten equations.单分子米氏方程。
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本文引用的文献

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Michaelis-Menten kinetics at high enzyme concentrations.高酶浓度下的米氏动力学。
Bull Math Biol. 2003 Nov;65(6):1111-29. doi: 10.1016/S0092-8240(03)00059-4.
3
The kinetics of enzyme action.酶作用的动力学
Biochim Biophys Acta. 1957 Jan;23(1):70-80. doi: 10.1016/0006-3002(57)90286-x.
6
Two decades of RNA catalysis.RNA催化的二十年。
Chem Biol. 2002 Sep;9(9):961-9. doi: 10.1016/s1074-5521(02)00217-x.

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