相似文献
1
Updates to the RMAP short-read mapping software.
Bioinformatics. 2009 Nov 1;25(21):2841-2. doi: 10.1093/bioinformatics/btp533. Epub 2009 Sep 7.
2
Using quality scores and longer reads improves accuracy of Solexa read mapping.
BMC Bioinformatics. 2008 Feb 28;9:128. doi: 10.1186/1471-2105-9-128.
3
Improving read mapping using additional prefix grams.
BMC Bioinformatics. 2014 Feb 5;15:42. doi: 10.1186/1471-2105-15-42.
4
CloudBurst: highly sensitive read mapping with MapReduce.
Bioinformatics. 2009 Jun 1;25(11):1363-9. doi: 10.1093/bioinformatics/btp236. Epub 2009 Apr 8.
5
QuasR: quantification and annotation of short reads in R.
Bioinformatics. 2015 Apr 1;31(7):1130-2. doi: 10.1093/bioinformatics/btu781. Epub 2014 Nov 21.
6
QuorUM: An Error Corrector for Illumina Reads.
PLoS One. 2015 Jun 17;10(6):e0130821. doi: 10.1371/journal.pone.0130821. eCollection 2015.
7
MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence.
BMC Genomics. 2014 Nov 15;15(1):969. doi: 10.1186/1471-2164-15-969.
8
OSA: a fast and accurate alignment tool for RNA-Seq.
Bioinformatics. 2012 Jul 15;28(14):1933-4. doi: 10.1093/bioinformatics/bts294. Epub 2012 May 15.
9
Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data.
Bioinformatics. 2009 Dec 15;25(24):3207-12. doi: 10.1093/bioinformatics/btp579. Epub 2009 Oct 6.
10
X-MATE: a flexible system for mapping short read data.
Bioinformatics. 2011 Feb 15;27(4):580-1. doi: 10.1093/bioinformatics/btq698. Epub 2011 Jan 6.
引用本文的文献
1
Analysis of Bisulfite Sequencing Data Using Bismark and DMRcaller to Identify Differentially Methylated Regions.
Methods Mol Biol. 2022;2443:451-463. doi: 10.1007/978-1-0716-2067-0_23.
2
An effective method to resolve ambiguous bisulfite-treated reads.
BMC Bioinformatics. 2021 May 27;22(1):283. doi: 10.1186/s12859-021-04204-6.
3
Α Quantum Pattern Recognition Method for Improving Pairwise Sequence Alignment.
Sci Rep. 2019 May 10;9(1):7226. doi: 10.1038/s41598-019-43697-3.
4
Review of applications of high-throughput sequencing in personalized medicine: barriers and facilitators of future progress in research and clinical application.
Brief Bioinform. 2019 Sep 27;20(5):1795-1811. doi: 10.1093/bib/bby051.
5
CLIP-related methodologies and their application to retrovirology.
Retrovirology. 2018 May 2;15(1):35. doi: 10.1186/s12977-018-0417-2.
6
Computational Methods for Assessing Chromatin Hierarchy.
Comput Struct Biotechnol J. 2018 Feb 15;16:43-53. doi: 10.1016/j.csbj.2018.02.003. eCollection 2018.
7
Evolutionary expansion of DNA hypomethylation in the mammalian germline genome.
Genome Res. 2018 Feb;28(2):145-158. doi: 10.1101/gr.225896.117. Epub 2017 Dec 19.
8
VAliBS: a visual aligner for bisulfite sequences.
BMC Bioinformatics. 2017 Oct 16;18(Suppl 12):410. doi: 10.1186/s12859-017-1827-1.
9
Recent computational developments on CLIP-seq data analysis and microRNA targeting implications.
Brief Bioinform. 2018 Nov 27;19(6):1290-1301. doi: 10.1093/bib/bbx063.
10
Short Read Mapping: An Algorithmic Tour.
Proc IEEE Inst Electr Electron Eng. 2017 Mar;105(3):436-458. doi: 10.1109/JPROC.2015.2455551. Epub 2015 Sep 7.
本文引用的文献
1
CloudBurst: highly sensitive read mapping with MapReduce.
Bioinformatics. 2009 Jun 1;25(11):1363-9. doi: 10.1093/bioinformatics/btp236. Epub 2009 Apr 8.
2
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Genome Biol. 2009;10(3):R25. doi: 10.1186/gb-2009-10-3-r25. Epub 2009 Mar 4.
3
Mapping short DNA sequencing reads and calling variants using mapping quality scores.
Genome Res. 2008 Nov;18(11):1851-8. doi: 10.1101/gr.078212.108. Epub 2008 Aug 19.
4
ZOOM! Zillions of oligos mapped.
Bioinformatics. 2008 Nov 1;24(21):2431-7. doi: 10.1093/bioinformatics/btn416. Epub 2008 Aug 6.
5
Using quality scores and longer reads improves accuracy of Solexa read mapping.
BMC Bioinformatics. 2008 Feb 28;9:128. doi: 10.1186/1471-2105-9-128.
6
SOAP: short oligonucleotide alignment program.
Bioinformatics. 2008 Mar 1;24(5):713-4. doi: 10.1093/bioinformatics/btn025. Epub 2008 Jan 28.
Zotero 插件