Crobu Danila, Canevari Giulia, Milani Mario, Pandini Vittorio, Vanoni Maria Antonietta, Bolognesi Martino, Zanetti Giuliana, Aliverti Alessandro
Dipartimento di Scienze Biomolecolari e Biotecnologie, Universita degli Studi di Milano, via Celoria 26, 20133 Milano, Italy.
Biochemistry. 2009 Oct 13;48(40):9525-33. doi: 10.1021/bi9013209.
The NADP-binding site of Plasmodium falciparum ferredoxin-NADP(+) reductase contains two basic residues, His286 and Lys249, conserved within the Plasmodium genus, but not in other plant-type homologues. Previous crystal studies indicated that His286 interacts with the adenine ring and with the 5'-phosphate of 2'-P-AMP, a ligand that mimics the adenylate moiety of NADP(H). Here we show that replacement of His286 with aliphatic residues results both in a decrease in the affinity of the enzyme for NADPH and in a decrease in k(cat), due to a lowered hydride-transfer rate. Unexpectedly, the mutation to Gln produces an enzyme more active than the wild-type one, whereas the change to Lys destabilizes the nicotinamide-isoalloxazine interaction, decreasing k(cat). On the basis of the crystal structure of selected mutants complexed with 2'-P-AMP, we conclude that the His286 side chain plays a dual role in catalysis both by providing binding energy for NADPH and by favoring the catalytically competent orientation of its nicotinamide ring. For the latter function, the H-bonding potential rather than the positively charged state of the His286 imidazole seems sufficient. Furthermore, we show that the Lys249Ala mutation decreases K(m)(NADPH) and K(d) for NADP(+) or 2'-P-AMP by a factor of 10. We propose that the Lys249 side chain participates in substrate recognition by interacting with the 2'-phosphate of NADP(H) and that this interaction was not observed in the crystal form of the enzyme-2'-P-AMP complex due to a conformational perturbation of the substrate-binding loop induced by dimerization.
恶性疟原虫铁氧化还原蛋白 - NADP(+)还原酶的NADP结合位点包含两个碱性残基,即His286和Lys249,它们在疟原虫属中保守,但在其他植物型同源物中不存在。先前的晶体学研究表明,His286与腺嘌呤环以及2'-P-AMP的5'-磷酸相互作用,2'-P-AMP是一种模拟NADP(H)腺苷酸部分的配体。在这里我们表明,用脂肪族残基取代His286会导致酶对NADPH的亲和力下降以及k(cat)降低,这是由于氢化物转移速率降低所致。出乎意料的是,突变为Gln产生的酶比野生型更具活性,而突变为Lys会破坏烟酰胺 - 异咯嗪相互作用,降低k(cat)。基于与2'-P-AMP复合的选定突变体的晶体结构,我们得出结论,His286侧链在催化中起双重作用,既为NADPH提供结合能,又有利于其烟酰胺环的催化活性取向。对于后一种功能,His286咪唑的氢键形成潜力而非带正电状态似乎就足够了。此外,我们表明Lys249Ala突变使NADP(+)或2'-P-AMP的K(m)(NADPH)和K(d)降低了10倍。我们提出Lys249侧链通过与NADP(H)的2'-磷酸相互作用参与底物识别,并且由于二聚化引起的底物结合环的构象扰动,在酶 - 2'-P-AMP复合物的晶体形式中未观察到这种相互作用。