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噬菌体TP901-1遗传开关的建模:CI和MOR的异源二聚体确保强大的双稳态。

Modeling of the genetic switch of bacteriophage TP901-1: A heteromer of CI and MOR ensures robust bistability.

作者信息

Nakanishi Hiizu, Pedersen Margit, Alsing Anne K, Sneppen Kim

机构信息

Department of Physics, Kyushu University 33, Fukuoka 812-8581, Japan.

出版信息

J Mol Biol. 2009 Nov 20;394(1):15-28. doi: 10.1016/j.jmb.2009.08.075. Epub 2009 Sep 9.

Abstract

The lytic-lysogenic switch of the temperate lactococcal phage TP901-1 is fundamentally different from that of phage lambda. In phage TP901-1, the lytic promoter P(L) is repressed by CI, whereas repression of the lysogenic promoter P(R) requires the presence of both of the antagonistic regulator proteins, MOR and CI. We model the central part of the switch and compare the two cases for P(R) repression: the one where the two regulators interact only on the DNA and the other where the two regulators form a heteromer complex in the cytoplasm prior to DNA binding. The models are analyzed for bistability, and the predicted promoter repression folds are compared to experimental data. We conclude that the experimental data are best reproduced the latter case, where a heteromer complex forms in solution. We further find that CI sequestration by the formation of MOR:CI complexes in cytoplasm makes the genetic switch robust.

摘要

温和型乳球菌噬菌体TP901-1的裂解-溶原开关与噬菌体λ的开关有根本区别。在噬菌体TP901-1中,裂解启动子P(L)受CI抑制,而溶原启动子P(R)的抑制需要两种拮抗调节蛋白MOR和CI同时存在。我们对开关的核心部分进行建模,并比较P(R)抑制的两种情况:一种是两种调节蛋白仅在DNA上相互作用,另一种是两种调节蛋白在结合DNA之前在细胞质中形成异源复合物。分析模型的双稳性,并将预测的启动子抑制倍数与实验数据进行比较。我们得出结论,实验数据在后者(即溶液中形成异源复合物)的情况下得到了最佳再现。我们还发现,通过在细胞质中形成MOR:CI复合物来隔离CI,使遗传开关具有稳健性。

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