Feng Jun, Wong Ka-Yiu, Dyer Kippi, Pettitt B Montgomery
Department of Biology and Biochemistry, University of Houston, Houston, Texas 77204-5001, USA.
J Chem Phys. 2009 Sep 28;131(12):125102. doi: 10.1063/1.3224122.
Understanding transport properties of solvent such as diffusion and viscosity at interfaces with biomacromolecules and hard materials is of fundamental importance to both biology and biotechnology. Our study utilizes equilibrium molecular dynamics simulations to calculate solvent transport properties at a model peptide and microarray surface. Both diffusion and selected components of viscosity are considered. Solvent diffusion is found to be affected near the peptide and surface. The stress-stress correlation function of solvent near the hard surface exhibits long time memory. Both diffusion and viscosity are shown to be closely correlated with the density distribution function of water along the microarray surface.
了解溶剂在与生物大分子和硬质材料的界面处的传输特性,如扩散和粘度,对生物学和生物技术都至关重要。我们的研究利用平衡分子动力学模拟来计算模型肽和微阵列表面的溶剂传输特性。同时考虑了扩散和粘度的选定分量。发现溶剂扩散在肽和表面附近受到影响。硬质表面附近溶剂的应力-应力相关函数表现出长时间记忆。扩散和粘度都与沿微阵列表面的水的密度分布函数密切相关。