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FeFbpA-NTA 中外源阴离子交换的动力学和机制:质膜外阴离子不稳定性和铁结合蛋白 A 的阴离子结合活性的意义。

Kinetics and mechanism of exogenous anion exchange in FeFbpA-NTA: significance of periplasmic anion lability and anion binding activity of ferric binding protein A.

机构信息

Department of Chemistry, Duke University, Durham, NC 27708-0346, USA.

出版信息

J Biol Inorg Chem. 2010 Feb;15(2):237-48. doi: 10.1007/s00775-009-0589-2. Epub 2009 Oct 8.

DOI:10.1007/s00775-009-0589-2
PMID:19813031
Abstract

The bacterial transferrin ferric binding protein A (FbpA) requires an exogenous anion to facilitate iron sequestration, and subsequently to shuttle the metal across the periplasm to the cytoplasmic membrane. In the diverse conditions of the periplasm, numerous anions are known to be present. Prior in vitro experiments have demonstrated the ability of multiple anions to fulfill the synergistic iron-binding requirement, and the identity of the bound anion has been shown to modulate important physicochemical properties of iron-bound FbpA (FeFbpA). Here we address the kinetics and mechanism of anion exchange for the FeFbpA-nitrilotriacetate (NTA) assembly with several biologically relevant anions (citrate, oxalate, phosphate, and pyrophosphate), with nonphysiologic NTA serving as a representative synergistic anion/chelator. The kinetic data are consistent with an anion-exchange process that occurs in multiple steps, dependent on the identity of both the entering anion and the leaving anion. The exchange mechanism may proceed either as a direct substitution or through an intermediate FeFbpA-X* assembly based on anion (X) identity. Our kinetic results further develop an understanding of exogenous anion lability in the periplasm, as well as address the final step of the iron-free FbpA (apo-FbpA)/Fe(3+) sequestration mechanism. Our results highlight the kinetic significance of the FbpA anion binding site, demonstrating a correlation between apo-FbpA/anion affinity and the FeFbpA rate of anion exchange, further supporting the requirement of an exogenous anion to complete tight sequestration of iron by FbpA, and developing a mechanism for anion exchange within FeFbpA that is dependent on the identity of both the entering anion and the leaving anion.

摘要

细菌转铁蛋白铁结合蛋白 A(FbpA)需要一种外源阴离子来促进铁螯合,然后将金属穿过周质转移到细胞质膜。在周质的各种条件下,已知存在许多阴离子。先前的体外实验已经证明了多种阴离子具有满足协同铁结合要求的能力,并且结合阴离子的身份已被证明可以调节铁结合 FbpA(FeFbpA)的重要物理化学性质。在这里,我们研究了 FeFbpA-亚氨基二乙酸(NTA)与几种生物相关阴离子(柠檬酸盐、草酸盐、磷酸盐和焦磷酸盐)的组装的阴离子交换动力学和机制,非生理 NTA 作为代表性协同阴离子/螯合剂。动力学数据与一个阴离子交换过程一致,该过程分多个步骤进行,取决于进入阴离子和离开阴离子的身份。交换机制可能通过直接取代或基于阴离子(X)的身份通过 FeFbpA-X* 组装中间体进行。我们的动力学结果进一步发展了对外源阴离子在周质中的不稳定性的理解,以及解决了无铁 FbpA(apo-FbpA)/Fe(3+) 螯合机制的最后一步。我们的结果突出了 FbpA 阴离子结合位点的动力学意义,证明了 apo-FbpA/阴离子亲和力与 FeFbpA 阴离子交换速率之间的相关性,进一步支持了 FbpA 完成铁的紧密螯合需要外源阴离子,并为 FeFbpA 内的阴离子交换机制提供了一种机制,该机制依赖于进入阴离子和离开阴离子的身份。

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本文引用的文献

1
Ex vivo analysis of synergistic anion binding to FbpA in Gram-negative bacteria.革兰氏阴性菌中协同阴离子与FbpA结合的体外分析。
Biochemistry. 2008 Apr 8;47(14):4298-305. doi: 10.1021/bi701188x. Epub 2008 Mar 14.
2
Sulfate as a synergistic anion facilitating iron binding by the bacterial transferrin FbpA: the origins and effects of anion promiscuity.硫酸根作为一种协同阴离子促进细菌转铁蛋白FbpA与铁的结合:阴离子混杂性的起源及影响
J Am Chem Soc. 2007 Aug 8;129(31):9704-12. doi: 10.1021/ja0709268. Epub 2007 Jul 14.
3
The Haemophilus influenzae hFbpABC Fe3+ transporter: analysis of the membrane permease and development of a gallium-based screen for mutants.
流感嗜血杆菌hFbpABC铁离子转运蛋白:膜通透酶分析及基于镓的突变体筛选方法的建立
J Bacteriol. 2007 Jul;189(14):5130-41. doi: 10.1128/JB.00145-07. Epub 2007 May 11.
4
Kinetics of iron release from ferric binding protein (FbpA): mechanistic implications in bacterial periplasm-to-cytosol Fe3+ transport.铁从铁结合蛋白(FbpA)释放的动力学:对细菌周质到胞质Fe3+转运的机制启示
Biochemistry. 2005 Jul 19;44(28):9606-18. doi: 10.1021/bi0505518.
5
SUPREX (Stability of Unpurified Proteins from Rates of H/D Exchange) analysis of the thermodynamics of synergistic anion binding by ferric-binding protein (FbpA), a bacterial transferrin.对细菌转铁蛋白——铁结合蛋白(FbpA)协同阴离子结合的热力学进行SUPREX(基于氢/氘交换速率的未纯化蛋白质稳定性)分析。
Biochemistry. 2004 Dec 21;43(50):15767-74. doi: 10.1021/bi0481848.
6
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