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大肠杆菌DNA结合蛋白FIS的三维结构。

Three-dimensional structure of the E. coli DNA-binding protein FIS.

作者信息

Kostrewa D, Granzin J, Koch C, Choe H W, Raghunathan S, Wolf W, Labahn J, Kahmann R, Saenger W

机构信息

Institut für Kristallographie, Freie Universität Berlin, Germany.

出版信息

Nature. 1991 Jan 10;349(6305):178-80. doi: 10.1038/349178a0.

DOI:10.1038/349178a0
PMID:1986310
Abstract

The factor for inversion stimulation, FIS, is involved in several cellular processes, including site-specific recombination and transcriptional activation. In the reactions catalysed by the DNA invertases Gin, Hin and Cin, FIS stimulates recombination by binding to an enhancer sequence. Within the enhancer, two FIS dimers (each 2 x 98 amino acids) bind to two 15-base-pair consensus sequences and induce bending of the DNA. Current models propose that the enhancer-FIS complex organizes a specific synapse, either through direct interactions with Gin, or by modelling the substrate into a configuration suitable for recombination. Using X-ray analysis at 2.0 A resolution, we now show that FIS is composed of four alpha helices tightly intertwined to form a globular dimer with two protruding helix-turn-helix motifs. The 24 N-terminal amino acids are so poorly defined in the electron density map as to make interpretation doubtful, indicating that they might act as 'feelers' suitable for DNA or protein (invertase) recognition. We infer from model building that DNA has to bend for tight binding to FIS.

摘要

反向刺激因子(FIS)参与多种细胞过程,包括位点特异性重组和转录激活。在由DNA转化酶Gin、Hin和Cin催化的反应中,FIS通过与增强子序列结合来刺激重组。在增强子内,两个FIS二聚体(每个由2×98个氨基酸组成)与两个15个碱基对的共有序列结合,并诱导DNA弯曲。当前模型认为,增强子-FIS复合物通过与Gin直接相互作用,或通过将底物塑造成适合重组的构型来组织特定的突触。利用分辨率为2.0埃的X射线分析,我们现在表明FIS由四个紧密缠绕的α螺旋组成,形成一个具有两个突出的螺旋-转角-螺旋基序的球状二聚体。在电子密度图中,24个N端氨基酸的定义非常模糊,以至于难以解释,这表明它们可能作为适合DNA或蛋白质(转化酶)识别的“触角”。我们从模型构建中推断,DNA必须弯曲才能与FIS紧密结合。

相似文献

1
Three-dimensional structure of the E. coli DNA-binding protein FIS.大肠杆菌DNA结合蛋白FIS的三维结构。
Nature. 1991 Jan 10;349(6305):178-80. doi: 10.1038/349178a0.
2
The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding.野生型和突变型Fis蛋白的分子结构:突变变化与重组增强子功能或DNA结合之间的关系。
Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9558-62. doi: 10.1073/pnas.88.21.9558.
3
Spatial relationship of the Fis binding sites for Hin recombinational enhancer activity.用于Hin重组增强子活性的Fis结合位点的空间关系。
Nature. 1987;329(6138):462-5. doi: 10.1038/329462a0.
4
Variable structures of Fis-DNA complexes determined by flanking DNA-protein contacts.由侧翼DNA-蛋白质相互作用决定的Fis-DNA复合物的可变结构。
J Mol Biol. 1996 Dec 13;264(4):675-95. doi: 10.1006/jmbi.1996.0669.
5
Induction and repair of cyclobutane pyrimidine dimers in the Escherichia coli tRNA gene tyrT: Fis protein affects dimer induction in the control region and suppresses preferential repair in the coding region of the transcribed strand, except in a short region near the transcription start site.大肠杆菌tRNA基因tyrT中环丁烷嘧啶二聚体的诱导与修复:Fis蛋白影响控制区域中二聚体的诱导,并抑制转录链编码区域中的优先修复,但转录起始位点附近的一个短区域除外。
J Mol Biol. 1997 Aug 8;271(1):31-46. doi: 10.1006/jmbi.1997.1154.
6
Activation of RpoS-dependent proP P2 transcription by the Fis protein in vitro.体外Fis蛋白对RpoS依赖性proP P2转录的激活作用。
J Mol Biol. 1997 Jul 18;270(3):346-59. doi: 10.1006/jmbi.1997.1133.
7
FIS activates glnAp2 in Escherichia coli: role of a DNA bend centered at -55, upstream of the transcription start site.FIS在大肠杆菌中激活glnAp2:转录起始位点上游-55处为中心的DNA弯曲的作用。
FEMS Microbiol Lett. 2006 Apr;257(1):99-105. doi: 10.1111/j.1574-6968.2006.00150.x.
8
Processive recombination by wild-type gin and an enhancer-independent mutant. Insight into the mechanisms of recombination selectivity and strand exchange.野生型gin和增强子非依赖性突变体的进行性重组。对重组选择性和链交换机制的深入了解。
J Mol Biol. 1994 Oct 28;243(3):437-57. doi: 10.1006/jmbi.1994.1671.
9
Structure of the Escherichia coli response regulator NarL.大肠杆菌应答调节因子NarL的结构
Biochemistry. 1996 Aug 27;35(34):11053-61. doi: 10.1021/bi960919o.
10
Identification of new Fis binding sites by DNA scission with Fis-1,10-phenanthroline-copper(I) chimeras.利用Fis-1,10-菲咯啉-铜(I)嵌合体通过DNA断裂鉴定新的Fis结合位点。
Biochemistry. 1996 Apr 9;35(14):4326-33. doi: 10.1021/bi952040z.

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