• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

物种形成的孤岛还是沙漠中的幻影?探讨限制重组在维持物种中的作用。

Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species.

机构信息

Biology Department, Duke University, Durham, NC 27708, USA.

出版信息

Heredity (Edinb). 2009 Dec;103(6):439-44. doi: 10.1038/hdy.2009.151.

DOI:10.1038/hdy.2009.151
PMID:19920849
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2809014/
Abstract

Over the past decade, many studies documented high genetic divergence between closely related species in genomic regions experiencing restricted recombination in hybrids, such as within chromosomal rearrangements or areas adjacent to centromeres. Such regions have been called 'islands of speciation' because of their presumed role in maintaining the integrity of species despite gene flow elsewhere in the genome. Here, we review alternative explanations for such patterns. Segregation of ancestral variation or artifacts of nucleotide diversity within species can readily lead to higher F(ST) in regions of restricted recombination than other parts of the genome, even in the complete absence of interspecies gene flow, and thereby cause investigators to erroneously conclude that islands of speciation exist. We conclude by discussing strengths and weaknesses of various means for testing the role of restricted recombination in maintaining species.

摘要

在过去的十年中,许多研究记录了在杂交中经历限制重组的基因组区域中密切相关的物种之间的高遗传分歧,例如在染色体重排或着丝粒附近的区域。由于这些区域在基因组的其他地方存在基因流的情况下,仍然假定对物种的完整性具有重要作用,因此这些区域被称为“物种形成的岛屿”。在这里,我们回顾了对这种模式的替代解释。祖先变异的分离或物种内核苷酸多样性的假象很容易导致限制重组区域的 F(ST)高于基因组的其他部分,即使在完全没有种间基因流的情况下也是如此,从而导致研究人员错误地得出存在物种形成的岛屿的结论。最后,我们讨论了各种检验限制重组在维持物种中的作用的方法的优缺点。

相似文献

1
Islands of speciation or mirages in the desert? Examining the role of restricted recombination in maintaining species.物种形成的孤岛还是沙漠中的幻影?探讨限制重组在维持物种中的作用。
Heredity (Edinb). 2009 Dec;103(6):439-44. doi: 10.1038/hdy.2009.151.
2
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers.连锁选择和重组率变异驱动了鹟科(Ficedula)捕蝇器物种形成连续体中分化基因组景观的进化。
Genome Res. 2015 Nov;25(11):1656-65. doi: 10.1101/gr.196485.115. Epub 2015 Sep 9.
3
Reanalysis suggests that genomic islands of speciation are due to reduced diversity, not reduced gene flow.重新分析表明,物种形成的基因组岛是由于多样性减少,而不是基因流动减少所致。
Mol Ecol. 2014 Jul;23(13):3133-57. doi: 10.1111/mec.12796. Epub 2014 Jun 17.
4
Recombination rate variation and speciation: theoretical predictions and empirical results from rabbits and mice.重组率变异与物种形成:来自兔和鼠的理论预测和实证结果。
Philos Trans R Soc Lond B Biol Sci. 2012 Feb 5;367(1587):409-21. doi: 10.1098/rstb.2011.0249.
5
Recombination and speciation: loci near centromeres are more differentiated than loci near telomeres between subspecies of the European rabbit (Oryctolagus cuniculus).重组与物种形成:在欧洲野兔(穴兔)的亚种之间,着丝粒附近的基因座比端粒附近的基因座分化程度更高。
Genetics. 2009 Feb;181(2):593-606. doi: 10.1534/genetics.108.096826. Epub 2008 Nov 17.
6
Gene flow-dependent genomic divergence between Anopheles gambiae M and S forms.基因流依赖性的冈比亚按蚊 M 和 S 型之间的基因组分歧。
Mol Biol Evol. 2012 Jan;29(1):279-91. doi: 10.1093/molbev/msr199. Epub 2011 Aug 11.
7
Recombination Rate Evolution and the Origin of Species.重组率演化与物种起源。
Trends Ecol Evol. 2016 Mar;31(3):226-236. doi: 10.1016/j.tree.2015.12.016. Epub 2016 Jan 29.
8
Genetic association of physically unlinked islands of genomic divergence in incipient species of Anopheles gambiae.在冈比亚按蚊初生种中,物理上不连锁的基因组离散岛的遗传关联。
Mol Ecol. 2010 Mar;19(5):925-39. doi: 10.1111/j.1365-294X.2010.04531.x. Epub 2010 Feb 8.
9
Linked selection, differential introgression and recombination rate variation promote heterogeneous divergence in a pair of yellow croakers.连锁选择、差异渐渗和重组率变异促进了一对大黄鱼的异质分歧。
Mol Ecol. 2022 Nov;31(22):5729-5744. doi: 10.1111/mec.16693. Epub 2022 Sep 29.
10
The last bastion? X chromosome genotyping of Anopheles gambiae species pair males from a hybrid zone reveals complex recombination within the major candidate 'genomic island of speciation'.最后的堡垒?对来自杂交区的冈比亚按蚊种对雄性进行X染色体基因分型,揭示了主要候选“物种形成基因组岛”内的复杂重组。
Mol Ecol. 2016 Nov;25(22):5719-5731. doi: 10.1111/mec.13840. Epub 2016 Nov 3.

引用本文的文献

1
Genetic Differentiation is Constrained to Chromosomal Inversions and Putative Centromeres in Locally Adapted Populations With Higher Gene Flow.在具有较高基因流的局部适应种群中,遗传分化受限于染色体倒位和假定的着丝粒。
Mol Biol Evol. 2025 Apr 30;42(5). doi: 10.1093/molbev/msaf092.
2
The hybrid history of zebrafish.斑马鱼的杂交历史。
G3 (Bethesda). 2025 Feb 5;15(2). doi: 10.1093/g3journal/jkae299.
3
Local adaptation can cause both peaks and troughs in nucleotide diversity within populations.局部适应会导致种群内核苷酸多样性出现峰和谷。
G3 (Bethesda). 2024 Nov 6;14(11). doi: 10.1093/g3journal/jkae225.
4
Meristic co-evolution and genomic co-localization of lateral line scales and vertebrae in Central American cichlid fishes.中美洲丽鱼科鱼类侧线鳞片与椎骨的数量性状协同进化及基因组共定位
Ecol Evol. 2024 Sep 15;14(9):e70266. doi: 10.1002/ece3.70266. eCollection 2024 Sep.
5
Chromosomal Inversions and the Demography of Speciation in Drosophila montana and Drosophila flavomontana.染色体倒位与果蝇属的物种形成的种群动态:以 montana 果蝇和 flavomontana 果蝇为例。
Genome Biol Evol. 2024 Mar 2;16(3). doi: 10.1093/gbe/evae024.
6
Structural genomic variation and migratory behavior in a wild songbird.一种野生鸣禽的结构基因组变异与迁徙行为
Evol Lett. 2023 Oct 7;7(6):401-412. doi: 10.1093/evlett/qrad040. eCollection 2023 Dec.
7
Genomic Approaches Are Improving Taxonomic Representation in Genetic Studies of Speciation.基因组方法正在提高遗传分化研究中的分类学代表性。
Cold Spring Harb Perspect Biol. 2024 Feb 1;16(2):a041438. doi: 10.1101/cshperspect.a041438.
8
Demographically explicit scans for barriers to gene flow using gIMble.使用 gIMble 进行显型扫描以发现基因流障碍。
PLoS Genet. 2023 Oct 10;19(10):e1010999. doi: 10.1371/journal.pgen.1010999. eCollection 2023 Oct.
9
The role of recombination landscape in species hybridisation and speciation.重组景观在物种杂交和物种形成中的作用。
Front Plant Sci. 2023 Jul 6;14:1223148. doi: 10.3389/fpls.2023.1223148. eCollection 2023.
10
Subtle Introgression Footprints at the End of the Speciation Continuum in a Clade of Heliconius Butterflies.在一支海伦娜蝴蝶(Heliconius butterflies)分支中,在物种形成连续体的末端存在微妙的渐渗杂交痕迹。
Mol Biol Evol. 2023 Jul 5;40(7). doi: 10.1093/molbev/msad166.

本文引用的文献

1
A species definition for the modern synthesis.现代综合理论的物种定义。
Trends Ecol Evol. 1995 Jul;10(7):294-9. doi: 10.1016/0169-5347(95)90031-4.
2
Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?重新审视倒位在进化中的影响:从群体遗传标记到适应性转变和物种形成的驱动因素?
Annu Rev Ecol Evol Syst. 2008 Dec 1;39:21-42. doi: 10.1146/annurev.ecolsys.39.110707.173532.
3
Chromosomal inversions and species differences: when are genes affecting adaptive divergence and reproductive isolation expected to reside within inversions?染色体倒位与物种差异:当哪些基因影响适应性分歧和生殖隔离时,我们预期这些基因会位于倒位之中?
Evolution. 2009 Dec;63(12):3061-75. doi: 10.1111/j.1558-5646.2009.00786.x. Epub 2009 Jul 28.
4
The genomics of speciation in Drosophila: diversity, divergence, and introgression estimated using low-coverage genome sequencing.果蝇物种形成的基因组学:利用低覆盖度基因组测序估算多样性、分化及基因渗入
PLoS Genet. 2009 Jul;5(7):e1000550. doi: 10.1371/journal.pgen.1000550. Epub 2009 Jul 3.
5
A statistical approach for distinguishing hybridization and incomplete lineage sorting.一种区分杂交和不完全谱系分选的统计方法。
Am Nat. 2009 Aug;174(2):E54-70. doi: 10.1086/600082.
6
An approximate likelihood for genetic data under a model with recombination and population splitting.在具有重组和种群分裂的模型下,遗传数据的近似似然性。
Theor Popul Biol. 2009 Jun;75(4):331-45. doi: 10.1016/j.tpb.2009.04.001. Epub 2009 Apr 9.
7
Genomic patterns of adaptive divergence between chromosomally differentiated sunflower species.染色体分化的向日葵物种之间适应性分化的基因组模式。
Mol Biol Evol. 2009 Jun;26(6):1341-55. doi: 10.1093/molbev/msp043. Epub 2009 Mar 10.
8
Chromosomal rearrangements and gene flow over time in an inter-specific hybrid zone of the Sorex araneus group.长吻鼩鼱属物种间杂交带随时间推移的染色体重排与基因流动
Heredity (Edinb). 2009 Jun;102(6):616-25. doi: 10.1038/hdy.2009.19. Epub 2009 Feb 25.
9
Learning about modes of speciation by computational approaches.通过计算方法了解物种形成模式。
Evolution. 2009 Oct;63(10):2547-62. doi: 10.1111/j.1558-5646.2009.00662.x. Epub 2009 Feb 18.
10
Divergent selection and heterogeneous genomic divergence.趋异选择与异质基因组分化。
Mol Ecol. 2009 Feb;18(3):375-402. doi: 10.1111/j.1365-294X.2008.03946.x. Epub 2008 Dec 29.