• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

通过蒙特卡罗模拟理解溶液中线性聚乙烯亚胺的质子化行为。

Understanding the protonation behavior of linear polyethylenimine in solutions through Monte Carlo simulations.

机构信息

Department of Chemistry, The University of Memphis, Memphis, Tennessee 38154, USA.

出版信息

Biomacromolecules. 2010 Jan 11;11(1):29-38. doi: 10.1021/bm900842d.

DOI:10.1021/bm900842d
PMID:19954222
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2821107/
Abstract

The success of polyethyleneimine (PEI) as a nonviral-based gene delivery vector has been attributed to its proton buffering capacity. Despite the great interest in PEI for its use in nonviral-based gene delivery, the protonation behavior of PEI in solution is not well understood. Earlier experimental studies have reported inconsistent values of the protonation state of PEI. In this work, we report our investigation of the protonation behavior of a realistic linear PEI (lPEI) with computational approaches. Reported experimental pK(a) values of several diamine compounds are first examined. A screened Coulombic interaction with a distance dependence dielectric is shown to reproduce the shifted pK(a) values of the model diamine compounds. Then atomistic molecular dynamic simulations of lPEI chain with 20 repeating units are performed and the results are used to provide parameters for a coarse-grained polyamine model. The screened Coulombic interaction is then incorporated in the coarse-grained lPEI chain and computational titrations are performed. The obtained computational titration curves of lPEI in solutions were found to be in best agreement with experimental results by Smits et al., but the computational titration curves have too strong of a dependence on salt concentration compared to the experimental results by Smits et al. Disregarding the discrepancy in the salt dependence, our computational titrations reveal that approximately 55% of the lPEI amine groups are protonated under physiological conditions in solution with a nearly alternating arrangement of protonated and nonprotonated amines. Titrations of lPEI in the presence of a polyanion are also performed to determine how the charge state of lPEI could be affected by complexation with DNA in gene therapy preparations. While the presence of the polyanion increases the degree of protonation of the PEI, many of PEI amines remain unprotonated under physiological conditions, providing evidence that PEI complexed with DNA could still have proton buffering capacity. Potential sources of error that have resulted in the inconsistency of previously reported protonation states of PEI were also discussed.

摘要

聚亚乙基亚胺(PEI)作为一种非病毒基因传递载体的成功归因于其质子缓冲能力。尽管人们对 PEI 在非病毒基因传递中的应用非常感兴趣,但 PEI 在溶液中的质子化行为仍未得到很好的理解。早期的实验研究报告了 PEI 质子化状态的不一致值。在这项工作中,我们使用计算方法报告了对真实线性 PEI(lPEI)质子化行为的研究。首先检查了几种二胺化合物的实验报告 pK(a) 值。结果表明,具有距离依赖性介电常数的屏蔽库仑相互作用可以重现模型二胺化合物的移位 pK(a) 值。然后对具有 20 个重复单元的 lPEI 链进行原子分子动力学模拟,并将结果用于提供粗粒化聚胺模型的参数。然后将屏蔽库仑相互作用纳入粗粒化 lPEI 链中并进行计算滴定。结果发现,获得的 lPEI 在溶液中的计算滴定曲线与 Smits 等人的实验结果最为吻合,但与 Smits 等人的实验结果相比,计算滴定曲线对盐浓度的依赖性太强。忽略盐依赖性的差异,我们的计算滴定表明,在生理条件下,溶液中约 55%的 lPEI 胺基被质子化,质子化和非质子化胺基呈近乎交替排列。还进行了 lPEI 在多阴离子存在下的滴定,以确定 lPEI 的电荷状态如何可能会受到基因治疗制剂中与 DNA 络合的影响。虽然多阴离子的存在增加了 PEI 的质子化程度,但在生理条件下,许多 PEI 胺基仍未质子化,这表明与 DNA 络合的 PEI 仍可能具有质子缓冲能力。还讨论了导致以前报告的 PEI 质子化状态不一致的潜在误差源。

相似文献

1
Understanding the protonation behavior of linear polyethylenimine in solutions through Monte Carlo simulations.通过蒙特卡罗模拟理解溶液中线性聚乙烯亚胺的质子化行为。
Biomacromolecules. 2010 Jan 11;11(1):29-38. doi: 10.1021/bm900842d.
2
A discussion of the pH-dependent protonation behaviors of poly(2-(dimethylamino)ethyl methacrylate) (PDMAEMA) and poly(ethylenimine-ran-2-ethyl-2-oxazoline) (P(EI-r-EOz)).讨论聚(2-(二甲氨基)乙基甲基丙烯酸酯) (PDMAEMA) 和聚(乙撑亚胺-ran-2-乙基-2-恶唑啉) (P(EI-r-EOz)) 的 pH 依赖质子化行为。
J Phys Chem B. 2011 Feb 10;115(5):844-60. doi: 10.1021/jp109151s. Epub 2011 Jan 6.
3
Molecular dynamics simulations of DNA/PEI complexes: effect of PEI branching and protonation state.DNA/PEI 复合物的分子动力学模拟:PEI 支化和质子化状态的影响。
Biophys J. 2011 Jun 8;100(11):2754-63. doi: 10.1016/j.bpj.2011.04.045.
4
CHARMM force field and molecular dynamics simulations of protonated polyethylenimine.质子化聚乙烯亚胺的CHARMM力场与分子动力学模拟
J Comput Chem. 2017 Oct 15;38(27):2335-2348. doi: 10.1002/jcc.24890. Epub 2017 Jul 27.
5
Protonation of β-lactoglobulin in the presence of strong polyelectrolyte chains: a study using Monte Carlo simulation.使用蒙特卡罗模拟研究强聚电解质链存在下β-乳球蛋白的质子化。
Colloids Surf B Biointerfaces. 2017 Dec 1;160:161-168. doi: 10.1016/j.colsurfb.2017.09.018. Epub 2017 Sep 8.
6
Chemistry specificity of DNA-polycation complex salt response: a simulation study of DNA, polylysine and polyethyleneimine.DNA-聚阳离子复合盐响应的化学特异性:DNA、聚赖氨酸和聚乙烯亚胺的模拟研究
Phys Chem Chem Phys. 2015 Feb 21;17(7):5279-89. doi: 10.1039/c4cp04967e.
7
Revisiting complexation between DNA and polyethylenimine: does the disulfide linkage play a critical role in promoting gene delivery?重新审视DNA与聚乙烯亚胺之间的络合作用:二硫键在促进基因传递中起关键作用吗?
Macromol Biosci. 2014 Dec;14(12):1807-15. doi: 10.1002/mabi.201400253. Epub 2014 Sep 29.
8
Automated Parameterization of Coarse-Grained Polyethylenimine under a Martini Framework.在马蒂尼框架下粗粒度聚乙烯亚胺的自动参数化
J Chem Inf Model. 2023 Jul 24;63(14):4328-4341. doi: 10.1021/acs.jcim.3c00103. Epub 2023 Jul 9.
9
Ionization behavior of chitosan and chitosan-DNA polyplexes indicate that chitosan has a similar capability to induce a proton-sponge effect as PEI.壳聚糖及其与 DNA 形成的复合物的电离行为表明,壳聚糖具有与 PEI 类似的诱导质子海绵效应的能力。
Biomacromolecules. 2013 Jun 10;14(6):1732-40. doi: 10.1021/bm4000713. Epub 2013 May 15.
10
Elucidating the interplay between DNA-condensing and free polycations in gene transfection through a mechanistic study of linear and branched PEI.通过对线性和支化的聚乙烯亚胺的机理研究阐明 DNA 缩合和游离多聚阳离子在基因转染中的相互作用。
Biomaterials. 2011 Nov;32(33):8626-34. doi: 10.1016/j.biomaterials.2011.07.044. Epub 2011 Sep 1.

引用本文的文献

1
pH modification of gel mobility shift improves polyplex selection In Vivo.凝胶迁移率变动的 pH 值修饰可改善体内多聚物选择。
Biochem Biophys Res Commun. 2024 Dec 17;738:150566. doi: 10.1016/j.bbrc.2024.150566. Epub 2024 Aug 17.
2
Charge Regulation Triggers Condensation of Short Oligopeptides to Polyelectrolytes.电荷调节引发短寡肽缩合形成聚电解质。
JACS Au. 2024 Mar 13;4(5):1775-1785. doi: 10.1021/jacsau.3c00668. eCollection 2024 May 27.
3
Three-Dimensional Cross-Linking Network Coating for the Flame Retardant of Bio-Based Polyamide 56 Fabric by Weak Bonds.

本文引用的文献

1
Molecular dynamics simulations of DNA-polycation complex formation.DNA-聚阳离子复合物形成的分子动力学模拟
Biophys J. 2009 Oct 7;97(7):1971-83. doi: 10.1016/j.bpj.2009.03.069.
2
Langevin-Debye model for nonlinear electrostatic screening of solvated ions.用于溶剂化离子非线性静电屏蔽的朗之万-德拜模型。
Phys Rev Lett. 2009 Feb 6;102(5):057603. doi: 10.1103/PhysRevLett.102.057603.
3
Nanoparticle adsorption on a weak polyelectrolyte. Stiffness, pH, charge mobility, and ionic concentration effects investigated by Monte Carlo simulations.
基于弱键的生物基聚酰胺56织物阻燃用三维交联网络涂层
Polymers (Basel). 2024 Apr 10;16(8):1044. doi: 10.3390/polym16081044.
4
Carbon capture in polymer-based electrolytes.基于聚合物的电解质中的碳捕获。
Sci Adv. 2024 Apr 19;10(16):eadk2350. doi: 10.1126/sciadv.adk2350.
5
Map conformational landscapes of intrinsically disordered proteins with polymer physics quantities.利用聚合物物理量绘制内在无序蛋白质的构象景观图。
Biophys J. 2024 May 21;123(10):1253-1263. doi: 10.1016/j.bpj.2024.04.010. Epub 2024 Apr 12.
6
Closing the Gap between Experiment and Simulation─A Holistic Study on the Complexation of Small Interfering RNAs with Polyethylenimine.弥合实验与模拟之间的差距——聚亚乙基亚胺与小干扰 RNA 复合物的整体研究
Mol Pharm. 2024 May 6;21(5):2163-2175. doi: 10.1021/acs.molpharmaceut.3c00747. Epub 2024 Feb 19.
7
Stimuli-Responsive Nanotechnology for RNA Delivery.刺激响应型纳米技术在 RNA 递送中的应用
Adv Sci (Weinh). 2023 Dec;10(36):e2303597. doi: 10.1002/advs.202303597. Epub 2023 Nov 1.
8
Cationic Polymers as Transfection Reagents for Nucleic Acid Delivery.用于核酸递送的阳离子聚合物作为转染试剂
Pharmaceutics. 2023 May 15;15(5):1502. doi: 10.3390/pharmaceutics15051502.
9
Delivery of Chemotherapy Agents and Nucleic Acids with pH-Dependent Nanoparticles.使用pH依赖性纳米颗粒递送化疗药物和核酸
Pharmaceutics. 2023 May 12;15(5):1482. doi: 10.3390/pharmaceutics15051482.
10
Hydroxyethyl substituted linear polyethylenimine for safe and efficient delivery of siRNA therapeutics.用于安全高效递送siRNA治疗药物的羟乙基取代线性聚乙烯亚胺
RSC Adv. 2018 Oct 16;8(62):35461-35473. doi: 10.1039/c8ra06298f. eCollection 2018 Oct 15.
纳米颗粒在弱聚电解质上的吸附。通过蒙特卡罗模拟研究刚度、pH值、电荷迁移率和离子浓度的影响。
J Phys Chem B. 2006 Oct 26;110(42):20954-64. doi: 10.1021/jp063671d.
4
Ionization equilibria and conformational transitions in polyprotic molecules and polyelectrolytes.多质子分子和聚电解质中的电离平衡与构象转变。
J Phys Chem B. 2006 Jun 8;110(22):10937-50. doi: 10.1021/jp060684i.
5
Polyethylenimine-based non-viral gene delivery systems.基于聚乙烯亚胺的非病毒基因递送系统
Eur J Pharm Biopharm. 2005 Jul;60(2):247-66. doi: 10.1016/j.ejpb.2004.11.011.
6
Recent advances in rational gene transfer vector design based on poly(ethylene imine) and its derivatives.基于聚乙烯亚胺及其衍生物的合理基因转移载体设计的最新进展。
J Gene Med. 2005 Aug;7(8):992-1009. doi: 10.1002/jgm.773.
7
Titration of hydrophobic polyelectrolytes using Monte Carlo simulations.使用蒙特卡罗模拟对疏水性聚电解质进行滴定
J Chem Phys. 2005 Mar 1;122(9):094911. doi: 10.1063/1.1856923.
8
Equilibrium charge distribution on annealed polyelectrolytes.退火聚电解质上的平衡电荷分布
Eur Phys J E Soft Matter. 2002 Jun;8(3):339-46. doi: 10.1140/epje/i2002-10019-y.
9
RDOCK: refinement of rigid-body protein docking predictions.RDOCK:刚体蛋白对接预测的优化
Proteins. 2003 Nov 15;53(3):693-707. doi: 10.1002/prot.10460.
10
Pegylated polyethylenimine-Fab' antibody fragment conjugates for targeted gene delivery to human ovarian carcinoma cells.用于靶向基因递送至人卵巢癌细胞的聚乙二醇化聚乙烯亚胺-Fab'抗体片段偶联物
Bioconjug Chem. 2003 Sep-Oct;14(5):989-96. doi: 10.1021/bc0340767.