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2'-脱氧-5-丙炔基尿苷:一种在不对称单元中具有两种构象的核苷。

2'-Deoxy-5-propynyluridine: a nucleoside with two conformations in the asymmetric unit.

作者信息

Budow Simone, Eickmeier Henning, Reuter Hans, Seela Frank

机构信息

Laboratory of Bioorganic Chemistry and Chemical Biology, Center for Nanotechnology, Heisenbergstrasse 11, 48149 Münster, Germany.

出版信息

Acta Crystallogr C. 2009 Dec;65(Pt 12):o645-8. doi: 10.1107/S0108270109044850. Epub 2009 Nov 21.

Abstract

The title compound, 1-(2-deoxy-beta-D-erythro-pentofuranosyl)-5-(prop-1-ynyl)pyrimidin-2,4(1H,3H)-dione, C(12)H(14)N(2)O(5), shows two conformations in the crystalline state: conformer 1 adopts a C2'-endo (close to (2)E; S-type) sugar pucker and an anti nucleobase orientation [chi = -134.04 (19) degrees], while conformer 2 shows an S sugar pucker (twisted C2'-endo-C3'-exo), which is accompanied by a different anti base orientation [chi = -162.79 (17) degrees]. Both molecules show a +sc (gauche, gauche) conformation at the exocyclic C4'-C5' bond and a coplanar orientation of the propynyl group with respect to the pyrimidine ring. The extended structure is a three-dimensional hydrogen-bond network involving intermolecular N-H...O and O-H...O hydrogen bonds. Only O atoms function as H-atom acceptor sites.

摘要

标题化合物1-(2-脱氧-β-D-赤藓糖基)-5-(丙-1-炔基)嘧啶-2,4(1H,3H)-二酮,化学式为C(12)H(14)N(2)O(5),在晶体状态下呈现两种构象:构象体1采用C2'-内型(接近(2)E;S型)糖环构象和反式碱基取向[χ = -134.04 (19)°],而构象体2呈现S型糖环构象(扭曲的C2'-内型-C3'-外型),同时伴有不同的反式碱基取向[χ = -162.79 (17)°]。两个分子在外环C4'-C5'键处均呈现+sc(gauche,gauche)构象,且丙炔基相对于嘧啶环呈共平面取向。扩展结构是一个三维氢键网络,涉及分子间的N-H...O和O-H...O氢键。只有O原子作为H原子受体位点。

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