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脊椎动物嗅觉受体基因的进化动态:环境与基因组内容的相互作用。

Evolutionary dynamics of olfactory receptor genes in chordates: interaction between environments and genomic contents.

机构信息

Department of Bioinformatics, Medical Research Institute, Tokyo Medical and Dental University, Tokyo, Japan.

出版信息

Hum Genomics. 2009 Dec;4(2):107-18. doi: 10.1186/1479-7364-4-2-107.

Abstract

Olfaction is essential for the survival of animals. Versatile odour molecules in the environment are received by olfactory receptors (ORs), which form the largest multigene family in vertebrates. Identification of the entire repertories of OR genes using bioinformatics methods from the whole-genome sequences of diverse organisms revealed that the numbers of OR genes vary enormously, ranging from approximately 1,200 in rats and approximately 400 in humans to approximately 150 in zebrafish and approximately 15 in pufferfish. Most species have a considerable fraction of pseudogenes. Extensive phylogenetic analyses have suggested that the numbers of gene gains and losses are extremely large in the OR gene family, which is a striking example of the birth-and-death evolution. It appears that OR gene repertoires change dynamically, depending on each organism's living environment. For example, higher primates equipped with a well-developed vision system have lost a large number of OR genes. Moreover, two groups of OR genes for detecting airborne odorants greatly expanded after the time of terrestrial adaption in the tetrapod lineage, whereas fishes retain diverse repertoires of genes that were present in aquatic ancestral species. The origin of vertebrate OR genes can be traced back to the common ancestor of all chordate species, but insects, nematodes and echinoderms utilise distinctive families of chemoreceptors, suggesting that chemoreceptor genes have evolved many times independently in animal evolution.

摘要

嗅觉对于动物的生存至关重要。环境中多样的气味分子被嗅觉受体(ORs)接收,ORs 构成了脊椎动物中最大的多基因家族。从不同生物体的全基因组序列中使用生物信息学方法鉴定整个 OR 基因库表明,OR 基因的数量差异巨大,从大鼠的约 1200 个和约 400 个人类到斑马鱼的约 150 个和约 15 个河豚鱼。大多数物种都有相当一部分假基因。广泛的系统发育分析表明,OR 基因家族的基因获得和丢失数量非常大,这是一个典型的“诞生和死亡”进化的例子。似乎 OR 基因库会根据每个生物体的生活环境而动态变化。例如,配备发达视觉系统的高等灵长类动物已经失去了大量的 OR 基因。此外,在四足动物谱系适应陆地之后,两组用于检测空气气味的 OR 基因大大扩展,而鱼类则保留了在水生祖先物种中存在的多样化基因库。脊椎动物 OR 基因的起源可以追溯到所有脊索动物物种的共同祖先,但昆虫、线虫和棘皮动物利用独特的化学感受器家族,这表明化学感受器基因在动物进化中已经独立进化了多次。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13be/3525206/304d08965172/1479-7364-4-2-107-1.jpg

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