Department of Chemistry, Sharif University of Technology, P.O. Box 11365-9516, Tehran, Iran.
Solid State Nucl Magn Reson. 2010 Feb-Apr;37(1-2):13-20. doi: 10.1016/j.ssnmr.2009.12.001. Epub 2009 Dec 16.
The experimental (13)C NMR chemical shift components of uracil in the solid state are reported for the first time (to our knowledge), as well as newer data for the (15)N nuclei. These experimental values are supported by extensive calculated data of the (13)C, (15)N and (17)O chemical shielding and (17)O and (14)N electric field gradient (EFG) tensors. In the crystal, uracil forms a number of strong and weak hydrogen bonds, and the effect of these on the (13)C and (15)N chemical shift tensors is studied. This powerful combination of the structural methods and theoretical calculations gives a very detailed view of the strong and weak hydrogen bond formation by this molecule. Good calculated results for the optimized cluster in most cases (except for the EFG values of the (14)N3 and (17)O4 nuclei) certify the accuracy of our optimized coordinates for the hydrogen nuclei. Our reported RMSD values for the calculated chemical shielding and EFG tensors are smaller than those reported previously. In the optimized cluster the 6-311+G** basis set is the optimal one in the chemical shielding and EFG calculations, except for the EFG calculations of the oxygen nuclei, in which the 6-31+G** basis set is the optimal one. The optimal method for the chemical shielding and EFG calculations of the oxygen and nitrogen nuclei is the PW91PW91 method, while for the chemical shielding calculations of the (13)C nuclei the B3LYP method gives the best results.
首次报道了固态尿嘧啶中(13)C NMR 化学位移分量的实验值(据我们所知),以及(15)N 核的更新数据。这些实验值得到了广泛的(13)C、(15)N 和(17)O 化学屏蔽以及(17)O 和(14)N 电场梯度(EFG)张量的计算数据的支持。在晶体中,尿嘧啶形成了许多强氢键和弱氢键,研究了这些氢键对(13)C 和(15)N 化学位移张量的影响。这种结构方法和理论计算的强大组合,为该分子形成强氢键和弱氢键提供了非常详细的视图。在大多数情况下(除了(14)N3 和(17)O4 核的 EFG 值外),对优化簇的良好计算结果证明了我们对氢核优化坐标的准确性。我们报告的计算化学屏蔽和 EFG 张量的 RMSD 值小于以前报告的值。在优化簇中,6-311+G基组是化学屏蔽和 EFG 计算的最佳基组,除了氧核的 EFG 计算,在氧核的 EFG 计算中,6-31+G基组是最佳的。氧核和氮核化学屏蔽和 EFG 计算的最佳方法是 PW91PW91 方法,而(13)C 核化学屏蔽计算的最佳方法是 B3LYP 方法。