Developmental Epigenetics, Murdoch Children's Research Institute, Royal Children's Hospital, Parkville, Victoria 3052, Australia; Department of Paediatrics, University of Melbourne, Parkville, Victoria 3052, Australia.
Developmental Epigenetics, Murdoch Children's Research Institute, Royal Children's Hospital, Parkville, Victoria 3052, Australia.
J Biol Chem. 2010 Mar 26;285(13):9583-9593. doi: 10.1074/jbc.M109.064956. Epub 2010 Jan 13.
The genome of extraembryonic tissue, such as the placenta, is hypomethylated relative to that in somatic tissues. However, the origin and role of this hypomethylation remains unclear. The DNA methyltransferases DNMT1, -3A, and -3B are the primary mediators of the establishment and maintenance of DNA methylation in mammals. In this study, we investigated promoter methylation-mediated epigenetic down-regulation of DNMT genes as a potential regulator of global methylation levels in placental tissue. Although DNMT3A and -3B promoters lack methylation in all somatic and extraembryonic tissues tested, we found specific hypermethylation of the maintenance DNA methyltransferase (DNMT1) gene and found hypomethylation of the DNMT3L gene in full term and first trimester placental tissues. Bisulfite DNA sequencing revealed monoallelic methylation of DNMT1, with no evidence of imprinting (parent of origin effect). In vitro reporter experiments confirmed that DNMT1 promoter methylation attenuates transcriptional activity in trophoblast cells. However, global hypomethylation in the absence of DNMT1 down-regulation is apparent in non-primate placentas and in vitro derived human cytotrophoblast stem cells, suggesting that DNMT1 down-regulation is not an absolute requirement for genomic hypomethylation in all instances. These data represent the first demonstration of methylation-mediated regulation of the DNMT1 gene in any system and demonstrate that the unique epigenome of the human placenta includes down-regulation of DNMT1 with concomitant hypomethylation of the DNMT3L gene. This strongly implicates epigenetic regulation of the DNMT gene family in the establishment of the unique epigenetic profile of extraembryonic tissue in humans.
胚胎外组织(如胎盘)的基因组相对于体组织而言呈低甲基化状态。然而,这种低甲基化的起源和作用尚不清楚。DNA 甲基转移酶 DNMT1、-3A 和 -3B 是哺乳动物中 DNA 甲基化建立和维持的主要介质。在这项研究中,我们研究了启动子甲基化介导的 DNMT 基因表观遗传下调,作为胎盘组织中整体甲基化水平的潜在调节剂。尽管在所有测试的体组织和胚胎外组织中,DNMT3A 和 -3B 启动子都没有甲基化,但我们发现维持性 DNA 甲基转移酶(DNMT1)基因存在特异性高甲基化,并且在足月和早期胎盘组织中发现 DNMT3L 基因低甲基化。亚硫酸氢盐 DNA 测序显示 DNMT1 呈单等位基因甲基化,没有印迹(亲本来源效应)的证据。体外报告基因实验证实,DNMT1 启动子甲基化可降低滋养细胞中的转录活性。然而,在非灵长类动物胎盘和体外衍生的人类绒毛膜滋养细胞干细胞中,尽管存在全局低甲基化,但没有 DNMT1 下调,这表明在所有情况下,DNMT1 下调不是基因组低甲基化的绝对要求。这些数据代表了在任何系统中首次证明 DNMT1 基因的甲基化介导调节,并且证明了人类胎盘的独特表观基因组包括 DNMT1 的下调,同时伴随着 DNMT3L 基因的低甲基化。这强烈表明 DNA 甲基转移酶基因家族的表观遗传调节在人类胚胎外组织独特的表观遗传特征的建立中起作用。