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新见解:远侧组氨酸灵活性在 Amphitrite ornata 脱卤过氧化物酶-血红蛋白配体稳定化中的作用。

New insights into the role of distal histidine flexibility in ligand stabilization of dehaloperoxidase-hemoglobin from Amphitrite ornata.

机构信息

Dipartimento di Chimica, Università di Firenze, Via della Lastruccia 3, I-50019 Sesto Fiorentino (FI), Italy.

出版信息

Biochemistry. 2010 Mar 9;49(9):1903-12. doi: 10.1021/bi9020567.

Abstract

The present work highlights the important role played by the distal histidine in controlling the binding of heme ligands in dehaloperoxidase (DHP) as compared to myoglobin and peroxidases. In DHP the distal histidine is highly mobile and undergoes a conformational change that places it within hydrogen-bonding distance of anionic ligands and water, where strong hydrogen bonding can occur. The detailed resonance Raman (RR) analysis at room temperature shows the presence of an equilibrium between a 5-coordinate and a 6-coordinate (aquo) high-spin form. The equilibrium shifts toward the aquo form at 12 K. These two forms are consistent with the existing X-ray structures where a closed conformation, with His55 positioned in the distal pocket and H-bonded with the distal water molecule (6-coordinate), and an open solvent-exposed conformation, with the His55 displaced from the distal pocket (5-coordinate form), are in equilibrium. Moreover, the comparison between the Raman data at 298 and 12 K and the results obtained by EPR of DHP in the presence of 4-iodophenol highlights the formation of a pure 5-coordinate high-spin form (open conformation). The data reported herein support the role of His55 in facilitating the interaction of substrate and inhibitor in the regulation of enzyme function, as previously suggested. The two conformations of His55 in equilibrium at room temperature provide a level of control that permits the distal histidine to act as both the acid-base catalyst in the peroxidase mechanism and the stabilizing amino acid for exogenous heme-coordinated ligands.

摘要

本工作强调了在脱卤过氧化物酶(DHP)中,与肌红蛋白和过氧化物酶相比,远端组氨酸在控制血红素配体结合方面所起的重要作用。在 DHP 中,远端组氨酸高度移动,并发生构象变化,使其处于与阴离子配体和水的氢键距离内,从而可以发生强氢键作用。在室温下进行的详细共振拉曼(RR)分析表明,存在 5 配位和 6 配位(水合)高自旋形式之间的平衡。在 12 K 时,平衡向水合形式转移。这两种形式与现有的 X 射线结构一致,其中封闭构象中,His55 位于远端口袋中并与远端水分子(6 配位)形成氢键,而开放的溶剂暴露构象中,His55 从远端口袋中位移(5 配位形式),处于平衡状态。此外,在 298 和 12 K 下的拉曼数据与 DHP 在存在 4-碘苯酚时的 EPR 结果之间的比较突出了纯 5 配位高自旋形式(开放构象)的形成。本文报道的数据支持 His55 在促进底物和抑制剂相互作用以调节酶功能方面的作用,如先前所建议的那样。在室温下处于平衡状态的 His55 的两种构象提供了一定的控制水平,使远端组氨酸既能作为过氧化物酶机制中的酸碱催化剂,又能作为外源血红素配位配体的稳定氨基酸。

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