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适冷假交替单胞菌 TAC125 的 2/2 血红蛋白的独特血红素口袋。

The peculiar heme pocket of the 2/2 hemoglobin of cold-adapted Pseudoalteromonas haloplanktis TAC125.

机构信息

Dipartimento di Chimica, Università di Firenze, 50019, Sesto Fiorentino (FI), Italy.

出版信息

J Biol Inorg Chem. 2011 Feb;16(2):299-311. doi: 10.1007/s00775-010-0726-y. Epub 2010 Nov 13.

Abstract

The genome of the cold-adapted bacterium Pseudoalteromonas haloplanktis TAC125 contains multiple genes encoding three distinct monomeric hemoglobins exhibiting a 2/2 α-helical fold. In the present work, one of these hemoglobins is studied by resonance Raman, electronic absorption and electronic paramagnetic resonance spectroscopies, kinetic measurements, and different bioinformatic approaches. It is the first cold-adapted bacterial hemoglobin to be characterized. The results indicate that this protein belongs to the 2/2 hemoglobin family, Group II, characterized by the presence of a tryptophanyl residue on the bottom of the heme distal pocket in position G8 and two tyrosyl residues (TyrCD1 and TyrB10). However, unlike other bacterial hemoglobins, the ferric state, in addition to the aquo hexacoordinated high-spin form, shows multiple hexacoordinated low-spin forms, where either TyrCD1 or TyrB10 can likely coordinate the iron. This is the first example in which both TyrCD1 and TyrB10 are proposed to be the residues that are alternatively involved in heme hexacoordination by endogenous ligands.

摘要

耐冷菌假交替单胞菌 TAC125 的基因组包含多个编码三种不同单体血红蛋白的基因,这些血红蛋白均具有 2/2α-螺旋折叠结构。在本工作中,对其中一种血红蛋白进行了共振拉曼、电子吸收和电子顺磁共振光谱、动力学测量以及不同生物信息学方法的研究。这是第一个被表征的耐冷细菌血红蛋白。结果表明,该蛋白属于 2/2 血红蛋白家族,第 II 组,其特征是在位置 G8 的血红素远端口袋底部存在色氨酸残基和两个酪氨酸残基(TyrCD1 和 TyrB10)。然而,与其他细菌血红蛋白不同的是,除了 aquo 六配位高自旋形式外,三价铁状态还显示出多种六配位低自旋形式,其中 TyrCD1 或 TyrB10 可能与铁配位。这是第一个提出 TyrCD1 和 TyrB10 两个残基可通过内源性配体交替参与血红素六配位的例子。

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