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中国犬细小病毒VP2基因的遗传变异分析

[Genetic variation analysis of canine parvovirus VP2 gene in China].

作者信息

Yi Li, Cheng Shi-Peng, Yan Xi-Jun, Wang Jian-Ke, Luo Bin

机构信息

Institue of Special Wild Economic Animal and Plant Science, Chinese Academy of Agricultural Sciences, Jilin 132109, China.

出版信息

Bing Du Xue Bao. 2009 Nov;25(6):452-9.

Abstract

To recognize the molecular biology character, phylogenetic relationship and the state quo prevalent of Canine parvovirus (CPV), Faecal samnples from pet dogs with acute enteritis in the cities of Beijing, Wuhan, and Nanjing were collected and tested for CPV by PCR and other assay between 2006 and 2008. There was no CPV to FPV (MEV) variation by PCR-RFLP analysis in all samples. The complete ORFs of VP2 genes were obtained by PCR from 15 clinical CPVs and 2 CPV vaccine strains. All amplicons were cloned and sequenced. Analysis of the VP2 sequences showed that clinical CPVs both belong to CPV-2a subtype, and could be classified into a new cluster by amino acids contrasting which contains Tyr-->Ile (324) mutation. Besides the 2 CPV vaccine strains belong to CPV-2 subtype, and both of them have scattered variation in amino acids residues of VP2 protein. Construction of the phylogenetic tree based on CPV VP2 sequence showed these 15 CPV clinical strains were in close relationship with Korea strain K001 than CPV-2a isolates in other countries at early time, It is indicated that the canine parvovirus genetic variation was associated with location and time in some degree. The survey of CPV capsid protein VP2 gene provided the useful information for the identification of CPV types and understanding of their genetic relationship.

摘要

为了解犬细小病毒(CPV)的分子生物学特征、系统发育关系及流行现状,于2006年至2008年期间采集了北京、武汉和南京等城市患有急性肠炎的宠物犬粪便样本,通过PCR及其他检测方法对CPV进行检测。所有样本经PCR-RFLP分析均未发现CPV向FPV(MEV)的变异。通过PCR从15株临床CPV和2株CPV疫苗株中获得了VP2基因的完整开放阅读框。所有扩增产物均进行了克隆和测序。VP2序列分析表明,临床CPV均属于CPV-2a亚型,通过氨基酸对比可分为一个新的簇,该簇包含Tyr→Ile(324)突变。此外,2株CPV疫苗株属于CPV-2亚型,它们在VP2蛋白的氨基酸残基上均有散在变异。基于CPV VP2序列构建的系统发育树显示,这15株CPV临床株与韩国株K001的亲缘关系比早期其他国家的CPV-2a分离株更近,表明犬细小病毒的遗传变异在一定程度上与地理位置和时间有关。对CPV衣壳蛋白VP2基因的调查为CPV类型的鉴定及其遗传关系的了解提供了有用信息。

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