Department of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, University of Vermont, Stafford Hall, 95 Carrigan Drive, Burlington, VT 05405-0068, USA.
J Mol Biol. 2010 Mar 19;397(1):46-56. doi: 10.1016/j.jmb.2010.01.024. Epub 2010 Jan 18.
7,8-Dihydro-8-oxoguanine (8-oxoG) is a major oxidative lesion found in DNA. The 8-oxoguanine DNA glycosylases (Ogg) responsible for the removal of 8-oxoG are divided into three families Ogg1, Ogg2 and AGOG. The Ogg2 members are devoid of the recognition loop used by Ogg1 to discriminate between 8-oxoG and guanine and it was unclear until recently how Ogg2 enzymes recognize the oxidized base. We present here the first crystallographic structure of an Ogg2 member, Methanocaldococcus janischii Ogg, in complex with a DNA duplex containing the 8-oxoG lesion. This structure highlights the crucial role of the C-terminal lysine, strictly conserved in Ogg2, in the recognition of 8-oxoG. The structure also reveals that Ogg2 undergoes a conformational change upon DNA binding similar to that observed in Ogg1 glycosylases. Furthermore, this work provides a structural rationale for the lack of opposite base specificity in this family of enzymes.
7,8-二氢-8-氧鸟嘌呤(8-oxoG)是 DNA 中发现的主要氧化损伤。负责去除 8-oxoG 的 8-氧鸟嘌呤 DNA 糖基化酶(Ogg)分为 Ogg1、Ogg2 和 AGOG 三个家族。Ogg2 成员缺乏 Ogg1 用于区分 8-oxoG 和鸟嘌呤的识别环,直到最近人们才清楚 Ogg2 酶如何识别氧化碱基。我们在这里展示了第一个 Ogg2 成员,Methanocaldococcus janischii Ogg 的晶体结构,该结构与包含 8-oxoG 损伤的 DNA 双链复合物。该结构突出了严格保守在 Ogg2 中的 C 末端赖氨酸在识别 8-oxoG 中的关键作用。该结构还表明,Ogg2 在 DNA 结合时会发生类似于在 Ogg1 糖苷酶中观察到的构象变化。此外,这项工作为该酶家族缺乏相反碱基特异性提供了结构基础。