• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

直链淀粉磷酸化酶二聚体界面处的正磷酸盐结合:突变分析其对酶活性和稳定性的作用。

Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme.

机构信息

Institute of Biotechnology and Biochemical Engineering, Graz University of Technology, Petersgasse 12, A-8010 Graz, Austria.

出版信息

BMC Biochem. 2010 Jan 29;11:8. doi: 10.1186/1471-2091-11-8.

DOI:10.1186/1471-2091-11-8
PMID:20113461
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2837607/
Abstract

BACKGROUND

Orthophosphate recognition at allosteric binding sites is a key feature for the regulation of enzyme activity in mammalian glycogen phosphorylases. Protein residues co-ordinating orthophosphate in three binding sites distributed across the dimer interface of a non-regulated bacterial starch phosphorylase (from Corynebacterium callunae) were individually replaced by Ala to interrogate their unknown function for activity and stability of this enzyme.

RESULTS

While the mutations affected neither content of pyridoxal 5'-phosphate cofactor nor specific activity in phosphorylase preparations as isolated, they disrupted (Thr28-->Ala, Arg141-->Ala) or decreased (Lys31-->Ala, Ser174-->Ala) the unusually strong protective effect of orthophosphate (10 or 100 mM) against inactivation at 45 degrees C and subunit dissociation enforced by imidazole, as compared to wild-type enzyme. Loss of stability in the mutated phosphorylases appeared to be largely due to weakened affinity for orthophosphate binding. Binding of sulphate mimicking the crystallographically observed "non-covalent phosphorylation" of the phosphorylase at the dimer interface did not have an allosteric effect on the enzyme activity.

CONCLUSIONS

The phosphate sites at the subunit-subunit interface of C. callunae starch phosphorylase appear to be cooperatively functional in conferring extra kinetic stability to the native dimer structure of the active enzyme. The molecular strategy exploited for quaternary structure stabilization is to our knowledge novel among dimeric proteins. It can be distinguished clearly from the co-solute effect of orthophosphate on protein thermostability resulting from (relatively weak) interactions of the ligand with protein surface residues.

摘要

背景

在变构结合位点识别正磷酸盐是调节哺乳动物糖原磷酸化酶酶活性的关键特征。在非调节细菌淀粉磷酸化酶(来自棒状杆菌)的二聚体界面上分布的三个结合位点中,与正磷酸盐配位的蛋白质残基分别被丙氨酸取代,以研究其对该酶活性和稳定性的未知功能。

结果

虽然突变既不影响吡哆醛 5'-磷酸辅因子的含量,也不影响作为分离物的磷酸化酶制剂的比活性,但它们破坏了(Thr28-->Ala,Arg141-->Ala)或降低了(Lys31-->Ala,Ser174-->Ala)正磷酸盐(10 或 100 mM)对 45°C 失活和咪唑强制亚基解离的异常强保护作用,与野生型酶相比。突变磷酸化酶的稳定性丧失似乎主要是由于与正磷酸盐结合的亲和力减弱所致。硫酸盐的结合模拟了在二聚体界面处观察到的磷酸化酶的“非共价磷酸化”,对酶活性没有变构效应。

结论

C. callunae 淀粉磷酸化酶亚基-亚基界面上的磷酸盐位点似乎在赋予天然二聚体结构的额外动力学稳定性方面具有协同功能。用于四级结构稳定的分子策略在我们的知识中是新颖的,它可以与配体与蛋白质表面残基的(相对较弱)相互作用导致的正磷酸盐对蛋白质热稳定性的共溶质效应明显区分开来。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/7cf809ceff5f/1471-2091-11-8-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/95a9b78d8696/1471-2091-11-8-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/f2de56598241/1471-2091-11-8-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/cc95dd68599b/1471-2091-11-8-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/7cf809ceff5f/1471-2091-11-8-4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/95a9b78d8696/1471-2091-11-8-1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/f2de56598241/1471-2091-11-8-2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/cc95dd68599b/1471-2091-11-8-3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/61ef/2837607/7cf809ceff5f/1471-2091-11-8-4.jpg

相似文献

1
Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme.直链淀粉磷酸化酶二聚体界面处的正磷酸盐结合:突变分析其对酶活性和稳定性的作用。
BMC Biochem. 2010 Jan 29;11:8. doi: 10.1186/1471-2091-11-8.
2
Tracking interactions that stabilize the dimer structure of starch phosphorylase from Corynebacterium callunae. Roles of Arg234 and Arg242 revealed by sequence analysis and site-directed mutagenesis.追踪稳定来自卡氏棒杆菌的淀粉磷酸化酶二聚体结构的相互作用。通过序列分析和定点诱变揭示的精氨酸234和精氨酸242的作用。
Eur J Biochem. 2003 May;270(10):2126-36. doi: 10.1046/j.1432-1033.2003.03562.x.
3
Relationships between structure, function and stability for pyridoxal 5'-phosphate-dependent starch phosphorylase from Corynebacterium callunae as revealed by reversible cofactor dissociation studies.通过可逆辅因子解离研究揭示的来自卡氏棒杆菌的5'-磷酸吡哆醛依赖性淀粉磷酸化酶的结构、功能与稳定性之间的关系
Eur J Biochem. 2004 Aug;271(16):3319-29. doi: 10.1111/j.1432-1033.2004.04265.x.
4
Mutagenesis of the dimer interface region of Corynebacterium callunae starch phosphorylase perturbs the phosphate-dependent conformational relay that enhances oligomeric stability of the enzyme.卡氏棒杆菌淀粉磷酸化酶二聚体界面区域的诱变扰乱了依赖磷酸盐的构象传递,而这种传递增强了该酶的寡聚稳定性。
J Biochem. 2003 Oct;134(4):599-606. doi: 10.1093/jb/mvg178.
5
Catalytic mechanism of alpha-retaining glucosyl transfer by Corynebacterium callunae starch phosphorylase: the role of histidine-334 examined through kinetic characterization of site-directed mutants.卡氏棒杆菌淀粉磷酸化酶进行α-保留型糖基转移的催化机制:通过定点突变体的动力学表征研究组氨酸-334的作用。
Biochem J. 2005 Apr 15;387(Pt 2):437-45. doi: 10.1042/BJ20041593.
6
Thermal denaturation pathway of starch phosphorylase from Corynebacterium callunae: oxyanion binding provides the glue that efficiently stabilizes the dimer structure of the protein.来自卡氏棒杆菌的淀粉磷酸化酶的热变性途径:氧阴离子结合提供了有效稳定蛋白质二聚体结构的黏合剂。
Protein Sci. 2000 Jun;9(6):1149-61. doi: 10.1110/ps.9.6.1149.
7
Probing the active site of Corynebacterium callunae starch phosphorylase through the characterization of wild-type and His334-->Gly mutant enzymes.通过对野生型和His334→Gly突变体酶的表征探究卡氏棒杆菌淀粉磷酸化酶的活性位点。
FEBS J. 2007 Oct;274(19):5105-15. doi: 10.1111/j.1742-4658.2007.06030.x. Epub 2007 Sep 4.
8
alpha-1,4-D-glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering.革兰氏阳性卡氏棒杆菌的α-1,4-D-葡聚糖磷酸化酶:从溶液X射线散射解析该酶的分离、生化特性及分子形状
Biochem J. 1997 Sep 15;326 ( Pt 3)(Pt 3):773-83. doi: 10.1042/bj3260773.
9
Studying non-covalent enzyme carbohydrate interactions by STD NMR.通过STD NMR研究非共价酶-碳水化合物相互作用
Carbohydr Res. 2008 Aug 11;343(12):2153-61. doi: 10.1016/j.carres.2007.12.023. Epub 2008 Jan 11.
10
Crystal structure of the purine nucleoside phosphorylase (PNP) from Cellulomonas sp. and its implication for the mechanism of trimeric PNPs.来自纤维单胞菌属(Cellulomonas sp.)的嘌呤核苷磷酸化酶(PNP)的晶体结构及其对三聚体PNP机制的意义。
J Mol Biol. 1999 Dec 17;294(5):1239-55. doi: 10.1006/jmbi.1999.3327.

引用本文的文献

1
Allosteric Regulation of Glycogen Phosphorylase by Order/Disorder Transition of the 250' and 280s Loops.别构调节糖原磷酸化酶通过 250' 和 280s 环的有序/无序转变。
Biochemistry. 2023 Apr 18;62(8):1360-1368. doi: 10.1021/acs.biochem.2c00671. Epub 2023 Mar 29.
2
Categorisation of culturable bioaerosols in a fruit juice manufacturing facility.在果汁生产工厂中可培养生物气溶胶的分类。
PLoS One. 2021 Apr 21;16(4):e0242969. doi: 10.1371/journal.pone.0242969. eCollection 2021.
3
The α-glucan phosphorylase MalP of Corynebacterium glutamicum is subject to transcriptional regulation and competitive inhibition by ADP-glucose.

本文引用的文献

1
An engineered folded PLP-bound monomer of Treponema denticola cystalysin reveals the effect of the dimeric structure on the catalytic properties of the enzyme.一种经过改造的与磷酸吡哆醛结合的密螺旋体溶胞素折叠单体揭示了二聚体结构对该酶催化特性的影响。
Proteins. 2009 Feb 1;74(2):304-17. doi: 10.1002/prot.22160.
2
Probing the active site of Corynebacterium callunae starch phosphorylase through the characterization of wild-type and His334-->Gly mutant enzymes.通过对野生型和His334→Gly突变体酶的表征探究卡氏棒杆菌淀粉磷酸化酶的活性位点。
FEBS J. 2007 Oct;274(19):5105-15. doi: 10.1111/j.1742-4658.2007.06030.x. Epub 2007 Sep 4.
3
谷氨酸棒杆菌的α-葡聚糖磷酸化酶MalP受转录调控以及ADP-葡萄糖的竞争性抑制。
J Bacteriol. 2015 Apr;197(8):1394-407. doi: 10.1128/JB.02395-14. Epub 2015 Feb 9.
Influence of the Hofmeister anions on protein stability as studied by thermal denaturation and chemical shift perturbation.
通过热变性和化学位移扰动研究霍夫迈斯特阴离子对蛋白质稳定性的影响。
Biochemistry. 2007 Jan 23;46(3):917-23. doi: 10.1021/bi0613426.
4
Asp-196-->Ala mutant of Leuconostoc mesenteroides sucrose phosphorylase exhibits altered stereochemical course and kinetic mechanism of glucosyl transfer to and from phosphate.嗜麦芽糖明串珠菌蔗糖磷酸化酶的Asp-196→Ala突变体表现出向磷酸转移葡糖基以及从磷酸转移葡糖基的立体化学过程和动力学机制的改变。
FEBS Lett. 2006 Jul 10;580(16):3905-10. doi: 10.1016/j.febslet.2006.06.020. Epub 2006 Jun 19.
5
On the origin of the thermostabilization of proteins induced by sodium phosphate.关于磷酸钠诱导蛋白质热稳定性的起源
J Am Chem Soc. 2005 Jul 13;127(27):9690-1. doi: 10.1021/ja051352e.
6
Catalytic mechanism of alpha-retaining glucosyl transfer by Corynebacterium callunae starch phosphorylase: the role of histidine-334 examined through kinetic characterization of site-directed mutants.卡氏棒杆菌淀粉磷酸化酶进行α-保留型糖基转移的催化机制:通过定点突变体的动力学表征研究组氨酸-334的作用。
Biochem J. 2005 Apr 15;387(Pt 2):437-45. doi: 10.1042/BJ20041593.
7
Relationships between structure, function and stability for pyridoxal 5'-phosphate-dependent starch phosphorylase from Corynebacterium callunae as revealed by reversible cofactor dissociation studies.通过可逆辅因子解离研究揭示的来自卡氏棒杆菌的5'-磷酸吡哆醛依赖性淀粉磷酸化酶的结构、功能与稳定性之间的关系
Eur J Biochem. 2004 Aug;271(16):3319-29. doi: 10.1111/j.1432-1033.2004.04265.x.
8
Mutagenesis of the dimer interface region of Corynebacterium callunae starch phosphorylase perturbs the phosphate-dependent conformational relay that enhances oligomeric stability of the enzyme.卡氏棒杆菌淀粉磷酸化酶二聚体界面区域的诱变扰乱了依赖磷酸盐的构象传递,而这种传递增强了该酶的寡聚稳定性。
J Biochem. 2003 Oct;134(4):599-606. doi: 10.1093/jb/mvg178.
9
The enzymatic oxidation of pyridoxine and pyridoxamine phosphates.吡哆醇磷酸酯和吡哆胺磷酸酯的酶促氧化作用。
J Biol Chem. 1961 Jul;236:2089-95.
10
Tracking interactions that stabilize the dimer structure of starch phosphorylase from Corynebacterium callunae. Roles of Arg234 and Arg242 revealed by sequence analysis and site-directed mutagenesis.追踪稳定来自卡氏棒杆菌的淀粉磷酸化酶二聚体结构的相互作用。通过序列分析和定点诱变揭示的精氨酸234和精氨酸242的作用。
Eur J Biochem. 2003 May;270(10):2126-36. doi: 10.1046/j.1432-1033.2003.03562.x.