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1
Thermal denaturation pathway of starch phosphorylase from Corynebacterium callunae: oxyanion binding provides the glue that efficiently stabilizes the dimer structure of the protein.来自卡氏棒杆菌的淀粉磷酸化酶的热变性途径:氧阴离子结合提供了有效稳定蛋白质二聚体结构的黏合剂。
Protein Sci. 2000 Jun;9(6):1149-61. doi: 10.1110/ps.9.6.1149.
2
Mechanism of thermal denaturation of maltodextrin phosphorylase from Escherichia coli.大肠杆菌麦芽糊精磷酸化酶的热变性机制
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3
Relationships between structure, function and stability for pyridoxal 5'-phosphate-dependent starch phosphorylase from Corynebacterium callunae as revealed by reversible cofactor dissociation studies.通过可逆辅因子解离研究揭示的来自卡氏棒杆菌的5'-磷酸吡哆醛依赖性淀粉磷酸化酶的结构、功能与稳定性之间的关系
Eur J Biochem. 2004 Aug;271(16):3319-29. doi: 10.1111/j.1432-1033.2004.04265.x.
4
Mutagenesis of the dimer interface region of Corynebacterium callunae starch phosphorylase perturbs the phosphate-dependent conformational relay that enhances oligomeric stability of the enzyme.卡氏棒杆菌淀粉磷酸化酶二聚体界面区域的诱变扰乱了依赖磷酸盐的构象传递,而这种传递增强了该酶的寡聚稳定性。
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5
Probing the active site of Corynebacterium callunae starch phosphorylase through the characterization of wild-type and His334-->Gly mutant enzymes.通过对野生型和His334→Gly突变体酶的表征探究卡氏棒杆菌淀粉磷酸化酶的活性位点。
FEBS J. 2007 Oct;274(19):5105-15. doi: 10.1111/j.1742-4658.2007.06030.x. Epub 2007 Sep 4.
6
Tracking interactions that stabilize the dimer structure of starch phosphorylase from Corynebacterium callunae. Roles of Arg234 and Arg242 revealed by sequence analysis and site-directed mutagenesis.追踪稳定来自卡氏棒杆菌的淀粉磷酸化酶二聚体结构的相互作用。通过序列分析和定点诱变揭示的精氨酸234和精氨酸242的作用。
Eur J Biochem. 2003 May;270(10):2126-36. doi: 10.1046/j.1432-1033.2003.03562.x.
7
Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme.直链淀粉磷酸化酶二聚体界面处的正磷酸盐结合:突变分析其对酶活性和稳定性的作用。
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The role of pyridoxal 5'-phosphate in plant phosphorylase.磷酸吡哆醛在植物磷酸化酶中的作用。
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9
Catalytic mechanism of alpha-retaining glucosyl transfer by Corynebacterium callunae starch phosphorylase: the role of histidine-334 examined through kinetic characterization of site-directed mutants.卡氏棒杆菌淀粉磷酸化酶进行α-保留型糖基转移的催化机制:通过定点突变体的动力学表征研究组氨酸-334的作用。
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10
alpha-1,4-D-glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering.革兰氏阳性卡氏棒杆菌的α-1,4-D-葡聚糖磷酸化酶:从溶液X射线散射解析该酶的分离、生化特性及分子形状
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3
Orthophosphate binding at the dimer interface of Corynebacterium callunae starch phosphorylase: mutational analysis of its role for activity and stability of the enzyme.直链淀粉磷酸化酶二聚体界面处的正磷酸盐结合:突变分析其对酶活性和稳定性的作用。
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4
Catalytic mechanism of alpha-retaining glucosyl transfer by Corynebacterium callunae starch phosphorylase: the role of histidine-334 examined through kinetic characterization of site-directed mutants.卡氏棒杆菌淀粉磷酸化酶进行α-保留型糖基转移的催化机制:通过定点突变体的动力学表征研究组氨酸-334的作用。
Biochem J. 2005 Apr 15;387(Pt 2):437-45. doi: 10.1042/BJ20041593.

本文引用的文献

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The enzymatic oxidation of pyridoxine and pyridoxamine phosphates.吡哆醇磷酸酯和吡哆胺磷酸酯的酶促氧化作用。
J Biol Chem. 1961 Jul;236:2089-95.
2
Mechanism of thermal denaturation of maltodextrin phosphorylase from Escherichia coli.大肠杆菌麦芽糊精磷酸化酶的热变性机制
Biochem J. 2000 Mar 1;346 Pt 2(Pt 2):255-63.
3
Phosphorylase recognition and phosphorolysis of its oligosaccharide substrate: answers to a long outstanding question.磷酸化酶对其寡糖底物的识别及磷酸解作用:一个长期悬而未决问题的答案
EMBO J. 1999 Sep 1;18(17):4619-32. doi: 10.1093/emboj/18.17.4619.
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Characterization of trehalose phosphorylase from Schizophyllum commune.裂褶菌中海藻糖磷酸化酶的特性分析
Biochem J. 1999 Jul 15;341 ( Pt 2)(Pt 2):385-93.
5
Proton relay system in the active site of maltodextrinphosphorylase via hydrogen bonds with large proton polarizability: an FT-IR difference spectroscopy study.通过与具有大质子极化率的氢键研究麦芽糖糊精磷酸化酶活性位点中的质子传递系统:傅里叶变换红外差光谱研究
Eur Biophys J. 1999;28(3):200-7. doi: 10.1007/s002490050200.
6
The crystal structure of the Escherichia coli maltodextrin phosphorylase-acarbose complex.大肠杆菌麦芽糖糊精磷酸化酶-阿卡波糖复合物的晶体结构。
Biochemistry. 1999 Apr 27;38(17):5337-45. doi: 10.1021/bi9828573.
7
Effect of inhibitor binding to beta subunits of F1ATPase on enzyme thermostability: a kinetic and FT-IR spectroscopic analysis.抑制剂与F1ATP酶β亚基结合对酶热稳定性的影响:动力学和傅里叶变换红外光谱分析
FEBS Lett. 1998 Aug 7;432(3):128-32. doi: 10.1016/s0014-5793(98)00816-3.
8
alpha-1,4-D-glucan phosphorylase of gram-positive Corynebacterium callunae: isolation, biochemical properties and molecular shape of the enzyme from solution X-ray scattering.革兰氏阳性卡氏棒杆菌的α-1,4-D-葡聚糖磷酸化酶:从溶液X射线散射解析该酶的分离、生化特性及分子形状
Biochem J. 1997 Sep 15;326 ( Pt 3)(Pt 3):773-83. doi: 10.1042/bj3260773.
9
Effects of temperature and SDS on the structure of beta-glycosidase from the thermophilic archaeon Sulfolobus solfataricus.温度和十二烷基硫酸钠对嗜热古菌嗜热栖热菌β-糖苷酶结构的影响
Biochem J. 1997 May 1;323 ( Pt 3)(Pt 3):833-40. doi: 10.1042/bj3230833.
10
Oligosaccharide substrate binding in Escherichia coli maltodextrin phosphorylase.大肠杆菌麦芽糖糊精磷酸化酶中寡糖底物的结合
Nat Struct Biol. 1997 May;4(5):405-12. doi: 10.1038/nsb0597-405.

来自卡氏棒杆菌的淀粉磷酸化酶的热变性途径:氧阴离子结合提供了有效稳定蛋白质二聚体结构的黏合剂。

Thermal denaturation pathway of starch phosphorylase from Corynebacterium callunae: oxyanion binding provides the glue that efficiently stabilizes the dimer structure of the protein.

作者信息

Griessler R, D'Auria S, Tanfani F, Nidetzky B

机构信息

Division of Biochemical Engineering, Institute of Food Technology, Universität für Bodenkultur Wien (BOKU), Austria.

出版信息

Protein Sci. 2000 Jun;9(6):1149-61. doi: 10.1110/ps.9.6.1149.

DOI:10.1110/ps.9.6.1149
PMID:10892808
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2144666/
Abstract

Starch phosphorylase from Corynebacterium callunae is a dimeric protein in which each mol of 90 kDa subunit contains 1 mol pyridoxal 5'-phosphate as an active-site cofactor. To determine the mechanism by which phosphate or sulfate ions bring about a greater than 500-fold stabilization against irreversible inactivation at elevated temperatures (> or = 50 degrees C), enzyme/oxyanion interactions and their role during thermal denaturation of phosphorylase have been studied. By binding to a protein site distinguishable from the catalytic site with dissociation constants of Ksulfate = 4.5 mM and Kphosphate approximately 16 mM, dianionic oxyanions induce formation of a more compact structure of phosphorylase, manifested by (a) an increase by about 5% in the relative composition of the alpha-helical secondary structure, (b) reduced 1H/2H exchange, and (c) protection of a cofactor fluorescence against quenching by iodide. Irreversible loss of enzyme activity is triggered by the release into solution of pyridoxal 5'-phosphate, and results from subsequent intermolecular aggregation driven by hydrophobic interactions between phosphorylase subunits that display a temperature-dependent degree of melting of secondary structure. By specifically increasing the stability of the dimer structure of phosphorylase (probably due to tightened intersubunit contacts), phosphate, and sulfate, this indirectly (1) preserves a functional active site up to approximately 50 degrees C, and (2) stabilizes the covalent protein cofactor linkage up to approximately 70 degrees C. The effect on thermostability shows a sigmoidal and saturatable dependence on the concentration of phosphate, with an apparent binding constant at 50 degrees C of approximately 25 mM. The extra stability conferred by oxyanion-ligand binding to starch phosphorylase is expressed as a dramatic shift of the entire denaturation pathway to a approximately 20 degrees C higher value on the temperature scale.

摘要

来自卡氏棒状杆菌的淀粉磷酸化酶是一种二聚体蛋白,每摩尔90 kDa的亚基含有1摩尔吡哆醛5'-磷酸作为活性位点辅因子。为了确定磷酸根离子或硫酸根离子在高温(≥50℃)下使酶对不可逆失活具有大于500倍稳定性的机制,研究了酶与含氧阴离子的相互作用及其在磷酸化酶热变性过程中的作用。通过与一个不同于催化位点的蛋白质位点结合,硫酸根的解离常数Ksulfate = 4.5 mM,磷酸根的解离常数Kphosphate约为16 mM,二价含氧阴离子诱导磷酸化酶形成更紧密的结构,表现为:(a)α-螺旋二级结构的相对组成增加约5%;(b)1H/2H交换减少;(c)辅因子荧光受到保护,免受碘化物淬灭。酶活性的不可逆丧失是由吡哆醛5'-磷酸释放到溶液中引发的,是由磷酸化酶亚基之间的疏水相互作用驱动的分子间聚集导致的,这些亚基的二级结构呈现出温度依赖性的解链程度。通过特异性增加磷酸化酶二聚体结构的稳定性(可能是由于亚基间接触紧密),磷酸根和硫酸根间接(1)在高达约50℃时保持功能性活性位点,(2)在高达约70℃时稳定共价蛋白辅因子连接。对热稳定性的影响对磷酸根浓度呈现S形和饱和依赖性,在50℃时的表观结合常数约为25 mM。含氧阴离子-配体与淀粉磷酸化酶结合赋予的额外稳定性表现为整个变性途径在温度尺度上显著向约高20℃的值移动。