Hospital Gregorio Marañón, Madrid, Spain.
Clin Microbiol Infect. 2010 Oct;16(10):1544-54. doi: 10.1111/j.1469-0691.2010.03161.x. Epub 2010 Jan 27.
Tuberculosis cases infected by the same Mycobacterium tuberculosis (MTB) strain are considered to be clustered and involved in a transmission chain. Large clusters are assumed to represent active transmission chains in a population. In the present study, we focused on the analysis of large clusters defined by IS6110-restriction fragment length polymorphism (RFLP) typing in the immigrant population in Madrid. We identified 12 large clusters (involving 43% of the isolates) comprising 4-23 representatives. We proposed a gradient of epidemiological certainty for these large clusters. For a cluster to be considered robust and a good indicator of recent transmission, the MTB strain involved should not have been identified in a geographically and epidemiologically unrelated population and the cluster had to be re-confirmed by another highly discriminative molecular marker (MIRU-VNTR). The clusters that we discovered were classified into three categories: high, intermediate and low expected epidemiological value. In the largest cluster in the study (cluster M6; 23 representatives), failures by both criteria were identified: the representative seven-band RFLP pattern was also the most prevalent in the unrelated population (25 cases) and the cluster was fully split by MIRU-15, suggesting a lack of epidemiological value. The RFLP pattern representative of this cluster was also identified in 64 isolates from five countries in the Latin American genotype database, and again proved to be heterogeneous according to the MIRU-15 analysis. Specific analysis of large clusters, combined with the application of criteria for evaluating their robustness, could help identify uninformative clusters and target epidemiological resources towards those clusters with higher expected epidemiological value.
结核分枝杆菌(MTB)菌株感染的结核病例被认为是聚集的,并涉及到传播链。大的聚集被认为代表了人群中活跃的传播链。在本研究中,我们专注于分析马德里移民人群中通过 IS6110 限制片段长度多态性(RFLP)分型定义的大聚集。我们确定了 12 个大聚集(涉及 43%的分离株),包含 4-23 个代表。我们为这些大聚集提出了一个流行病学确定性梯度。为了使一个聚集被认为是稳健的,并且是近期传播的良好指标,所涉及的 MTB 菌株不应在地理和流行病学上无关联的人群中被识别,并且该聚集必须通过另一个高度区分的分子标记(MIRU-VNTR)重新确认。我们发现的聚集被分为三类:高、中、低预期流行病学价值。在研究中最大的聚集(聚集 M6;23 个代表)中,两个标准都失败了:代表性的七带 RFLP 模式也是在无关人群中最普遍的(25 例),而 MIRU-15 完全分裂了该聚集,表明缺乏流行病学价值。该聚集的 RFLP 模式代表也在拉丁美洲基因型数据库中的五个国家的 64 个分离株中被识别,并且根据 MIRU-15 分析再次证明是异质的。对大聚集的具体分析,结合评估其稳健性的标准的应用,可以帮助识别无信息的聚集,并将流行病学资源集中在具有更高预期流行病学价值的聚集上。