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细菌转录终止因子Rho的抑制剂Psu的结晶及X射线初步分析

Crystallization and preliminary X-ray analysis of Psu, an inhibitor of the bacterial transcription terminator Rho.

作者信息

Khamrui Susmita, Ranjan Amitabh, Pani Bibhusita, Sen Ranjan, Sen Udayaditya

机构信息

Crystallography and Molecular Biology Division, Saha Institute of Nuclear Physics, 1/AF Bidhan Nagar, Kolkata 700 064, India.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Feb 1;66(Pt 2):204-6. doi: 10.1107/S1744309109053846. Epub 2010 Jan 28.

DOI:10.1107/S1744309109053846
PMID:20124724
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2815694/
Abstract

Psu, a coat protein from bacteriophage P4, inhibits Rho-dependent transcription termination both in vivo and in vitro. The Psu protein is alpha-helical in nature and appeared to be a dimer in solution. It interacts with Rho and affects the ATP binding and RNA-dependent ATPase activity of Rho, which in turn reduces the rate of RNA release from the elongation complex. Crystals of Psu were grown in space group I422 in the presence of PEG, with unit-cell parameters a = b = 148.76, c = 63.38 A and a calculated Matthews coefficient of 2.1 A(3) Da(-1) (41.5% solvent content), assuming the presence of two molecules in the asymmetric unit. A native data set was collected to 2.3 A resolution.

摘要

噬菌体P4的外壳蛋白Psu在体内和体外均抑制Rho依赖性转录终止。Psu蛋白本质上是α螺旋结构,在溶液中似乎以二聚体形式存在。它与Rho相互作用,影响Rho的ATP结合和RNA依赖性ATPase活性,进而降低RNA从延伸复合物中释放的速率。Psu晶体在存在聚乙二醇(PEG)的情况下于空间群I422中生长,晶胞参数a = b = 148.76,c = 63.38 Å,假设不对称单元中存在两个分子,计算得到的马修斯系数为2.1 ų Da⁻¹(溶剂含量41.5%)。收集到了分辨率为2.3 Å的天然数据集。

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本文引用的文献

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J Mol Biol. 2009 Jun 19;389(4):647-60. doi: 10.1016/j.jmb.2009.04.052. Epub 2009 May 3.
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Transcription termination factor rho prefers catalytically active elongation complexes for releasing RNA.转录终止因子rho更倾向于催化活性延伸复合物来释放RNA。
J Biol Chem. 2008 Jul 18;283(29):20243-51. doi: 10.1074/jbc.M801926200. Epub 2008 May 15.
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Rho-dependent terminators and transcription termination.Rho 依赖性终止子与转录终止
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J Biol Chem. 2006 Sep 8;281(36):26491-500. doi: 10.1074/jbc.M603982200. Epub 2006 Jul 7.
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