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噬菌体P4蛋白Psu抑制Rho依赖性转录终止的机制。

Mechanism of inhibition of Rho-dependent transcription termination by bacteriophage P4 protein Psu.

作者信息

Pani Bibhusita, Banerjee Sharmistha, Chalissery Jisha, Muralimohan Abishek, Loganathan Ramya Malarini, Suganthan Ragan Babu, Sen Ranjan

机构信息

Laboratory of Transcription Biology, Centre For DNA Fingerprinting and Diagnostics, ECIL Road, Nacharam, Hyderabad-500076, India.

出版信息

J Biol Chem. 2006 Sep 8;281(36):26491-500. doi: 10.1074/jbc.M603982200. Epub 2006 Jul 7.

Abstract

Psu, a coat protein from bacteriophage P4, has been shown to inhibit Rho-dependent transcription termination in vivo. Co-overexpression of Psu and Rho led to the loss of viability of the cells, which is the consequence of the anti-Rho activity of the protein. The antitermination property of Psu is abolished either by the deletion of 10 or 20 amino acids from its C terminus or by a mutation, Y80C, in Rho. All these experiments indicated probable interactions between Rho and Psu. Purified Psu protein is alpha-helical in nature and appeared to be a dimer. Co-purification of Rho and wild-type Psu on an affinity matrix and co-elution of both of them in Superose-6 gel filtration suggests a direct association of these proteins, whereas a C terminus 10-amino acid deletion derivative of Psu failed to be pulled down in this assay. This indicates that the loss of the function of these mutants is correlated with their inability to interact with each other. In vitro termination assays revealed that Psu can inhibit Rho-dependent termination specifically in a concentration-dependent manner. The presence of Psu affected the affinity of ATP and reduced the rate of ATPase activity of Rho but did not affect either primary or secondary RNA binding activities. In the presence of Psu, Rho was also observed to release RNA very slowly from a stalled elongation complex. We propose that Psu inhibits Rho-dependent termination by slowing down the translocation of Rho along the RNA because of its slow ATPase activity.

摘要

噬菌体P4的外壳蛋白Psu已被证明在体内可抑制Rho依赖性转录终止。Psu和Rho的共过表达导致细胞活力丧失,这是该蛋白抗Rho活性的结果。Psu的抗终止特性可通过从其C末端缺失10或20个氨基酸或通过Rho中的Y80C突变而消除。所有这些实验表明Rho和Psu之间可能存在相互作用。纯化的Psu蛋白本质上是α螺旋的,并且似乎是二聚体。Rho和野生型Psu在亲和基质上的共纯化以及它们在Superose-6凝胶过滤中的共洗脱表明这些蛋白直接缔合,而Psu的C末端10个氨基酸缺失衍生物在该测定中未能被拉下。这表明这些突变体功能的丧失与其无法相互作用相关。体外终止试验表明,Psu可以以浓度依赖性方式特异性抑制Rho依赖性终止。Psu的存在影响了ATP的亲和力并降低了Rho的ATPase活性速率,但不影响初级或次级RNA结合活性。在Psu存在下,还观察到Rho从停滞的延伸复合物中非常缓慢地释放RNA。我们提出,由于Psu的ATPase活性缓慢,它通过减缓Rho沿RNA的易位来抑制Rho依赖性终止。

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