Medical Genetics, Sapienza University, S. Camillo-Forlanini Hospital, Rome, Italy.
Clin Genet. 2010 Jun;77(6):581-6. doi: 10.1111/j.1399-0004.2009.01298.x. Epub 2010 Feb 4.
CDKN2A and CDK4 are the only known high-penetrant genes conferring proneness to cutaneous melanoma. The CDKN2A locus consists of four exons and encodes several alternate transcripts, two of which are p16(INK4a) and p14(ARF), and originate from different open reading frames. Exon 1alpha is specific for p16(INK4a), while exon 1beta characterizes p14(ARF). Most CDKN2A mutations are located in exons 1alpha and 2, while exon 1beta variations have been identified in rare melanoma-prone pedigrees. In a previous study, we investigated 155 Italian melanoma cases, including 94 familial melanomas (FAMs) and 61 sporadic multiple primary melanomas (MPMs), for p16(INK4a)/CDK4 germline alterations and identified 15 p16(INK4a) and 1 CDK4 point mutations. In the present work, we extended our search to p14(ARF) mutations and CDKN2A deletions in the remaining samples. We identified the recurrent g.193+1G> A mutation in two FAM cases, while an additional pedigree displayed the previously undescribed variant g.161G> A. Multiplex ligation-dependent probe amplification (MLPA) screening for copy variations resulted negative in all cases. In Italy, the overall frequency of p14(ARF) mutations is 3.2% in FAM and 0% in sporadic MPM. Re-evaluation of our patients' cohort emphasizes that the chance of identifying CDKN2A/CDK4 mutations in FAM is mainly influenced by the number of affected family members and the presence of one or more MPM cases. Accordingly, mutation rate rises to 61% in selected cases. Further studies are expected in order to investigate CDKN2A rarer mutations, including atypical deletions and inherited epimutations.
CDKN2A 和 CDK4 是唯一已知的易患皮肤黑色素瘤的高外显率基因。CDKN2A 基因座由四个外显子组成,编码几种交替转录本,其中两个是 p16(INK4a)和 p14(ARF),它们源自不同的开放阅读框。外显子 1alpha 是 p16(INK4a)的特异性,而外显子 1beta 则是 p14(ARF)的特征。大多数 CDKN2A 突变位于外显子 1alpha 和 2 中,而外显子 1beta 的变异则在罕见的易患黑色素瘤的家系中被发现。在之前的一项研究中,我们研究了 155 例意大利黑色素瘤病例,包括 94 例家族性黑色素瘤 (FAMs) 和 61 例散发性多发性原发性黑色素瘤 (MPMs),以检测 p16(INK4a)/CDK4 种系改变,并鉴定了 15 个 p16(INK4a)和 1 个 CDK4 点突变。在本工作中,我们在其余样本中扩展了对 p14(ARF)突变和 CDKN2A 缺失的搜索。我们在两个 FAM 病例中发现了 g.193+1G> A 突变的复发性突变,而另一个家系则显示了以前未描述的变体 g.161G> A。所有病例的多重连接依赖性探针扩增 (MLPA) 筛查均未发现拷贝数变异。在意大利,FAMs 中 p14(ARF)突变的总体频率为 3.2%,而散发性 MPM 中为 0%。对我们患者队列的重新评估强调,在 FAM 中鉴定 CDKN2A/CDK4 突变的机会主要受受影响家庭成员的数量以及一个或多个 MPM 病例的存在的影响。相应地,在选定的病例中,突变率上升至 61%。预计将进行进一步的研究,以研究 CDKN2A 更罕见的突变,包括非典型缺失和遗传表观突变。