Departments of Molecular and Cellular Biology, and Chemistry and Chemical Biology, Harvard University, Cambridge, MA 02138, USA.
Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2467-72. doi: 10.1073/pnas.0914073107. Epub 2010 Jan 25.
PR65 is the two-layered (alpha-alpha solenoid) HEAT-repeat (Huntingtin, elongation factor 3, a subunit of protein phosphatase 2A, PI3 kinase target of rapamycin 1) scaffold of protein phosphatase PP2A. Molecular dynamics simulations predict that, at forces expected in living systems, PR65 undergoes (visco-)elastic deformations in response to pulling/pushing on its ends. At lower forces, smooth global flexural and torsional changes occur via even redistribution of stress along the hydrophobic core of the molecule. At intermediate forces, helix-helix separation along one layer ("fracturing") leads to global relaxation plus loss of contact in the other layer to unstack the affected units. Fracture sites are determined by unusual sequences in contiguous interhelix turns. Normal mode analysis of the heterotrimeric PP2A enzyme reveals that its ambient conformational fluctuations are dominated by elastic deformations of PR65, which introduce a mechanical linkage between the separately bound regulatory and catalytic subunits. PR65-dominated fluctuations of PP2A have the effect of opening and closing the enzyme's substrate binding/catalysis interface, as well as altering the positions of certain catalytic residues. These results suggest that substrate binding/catalysis are sensitive to mechanical force. Force could be imposed from the outside (e.g., in PP2A's response to spindle tension) or arise spontaneously (e.g., in PP2A's interaction with unstructured proteins such as Tau, a microtubule-associated Alzheimer's-implicated protein). The presented example supports the view that conformation and function of protein complexes can be modulated by mechanical energy inputs, as well as by chemical energy inputs from ligand binding. Given that helical-repeat proteins are involved in many cellular processes, the findings also encourage the view that mechanical forces may be of widespread importance.
PR65 是由两层(α-α 螺线管)HEAT 重复序列(亨廷顿蛋白、延伸因子 3、蛋白磷酸酶 2A 的亚基、雷帕霉素靶蛋白 1 的 PI3 激酶)构成的蛋白磷酸酶 PP2A 支架。分子动力学模拟预测,在活系统中预期的力作用下,PR65 在其两端受到拉/推时会发生(粘弹)变形。在较低的力下,通过分子疏水性核心中应力的均匀再分配,会发生平滑的全局挠曲和扭转变化。在中等力下,一层中的螺旋-螺旋分离(“断裂”)导致全局松弛以及另一层中接触的丧失以解叠受影响的单元。断裂部位由连续的螺旋间转角中的异常序列决定。杂三聚体 PP2A 酶的正常模态分析表明,其环境构象波动主要由 PR65 的弹性变形主导,这在单独结合的调节和催化亚基之间引入了机械连接。PR65 主导的 PP2A 波动会打开和关闭酶的底物结合/催化界面,并改变某些催化残基的位置。这些结果表明,底物结合/催化对机械力敏感。力可以从外部施加(例如,在 PP2A 对纺锤张力的反应中),也可以自发产生(例如,在 PP2A 与非结构化蛋白如 Tau 的相互作用中,Tau 是一种与微管相关的阿尔茨海默病相关蛋白)。所提出的例子支持这样一种观点,即蛋白质复合物的构象和功能可以通过机械能量输入以及配体结合的化学能量输入来调节。鉴于螺旋重复蛋白参与许多细胞过程,这些发现也鼓励这样一种观点,即机械力可能具有广泛的重要性。