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使用后验概率对微生物源追踪中源分布的替代估计。

Alternative estimate of source distribution in microbial source tracking using posterior probabilities.

机构信息

Price Associates, Inc., One North Broadway Ste 406, White Plains, NY 10601, USA.

出版信息

Water Res. 2010 Apr;44(8):2629-37. doi: 10.1016/j.watres.2010.01.018. Epub 2010 Jan 29.

DOI:10.1016/j.watres.2010.01.018
PMID:20156631
Abstract

Microbial source tracking (MST) is a procedure used to determine the relative contributions of humans and animals to fecal microbial contamination of surface waters in a given watershed. Studies of MST methodology have focused on optimizing sampling, laboratory, and statistical analysis methods in order to improve the reliability of determining which sources contributed most to surface water fecal contaminant. The usual approach for estimating a source distribution of microbial contamination is to classify water sample microbial isolates into discrete source categories and calculate the proportion of these isolates in each source category. The set of proportions is an estimate of the contaminant source distribution. In this paper we propose and compare an alternative method for estimating a source distribution-averaging posterior probabilities of source identity across isolates. We conducted a Monte Carlo simulation covering a wide variety of watershed scenarios to compare the two methods. The results show that averaging source posterior probabilities across isolates leads to more accurate source distribution estimates than proportions that follow classification.

摘要

微生物源追踪(MST)是一种用于确定人类和动物对特定流域地表水粪便微生物污染相对贡献的方法。MST 方法的研究侧重于优化采样、实验室和统计分析方法,以提高确定哪些来源对地表水粪便污染物的贡献最大的可靠性。估计微生物污染源分布的常用方法是将水样微生物分离物分类到离散的源类别中,并计算每个源类别中这些分离物的比例。这组比例是污染物源分布的估计。在本文中,我们提出并比较了一种估计源分布的替代方法——跨分离物平均源身份的后验概率。我们进行了蒙特卡罗模拟,涵盖了各种流域场景,以比较这两种方法。结果表明,跨分离物平均源后验概率比遵循分类的比例更能准确估计源分布。

相似文献

1
Alternative estimate of source distribution in microbial source tracking using posterior probabilities.使用后验概率对微生物源追踪中源分布的替代估计。
Water Res. 2010 Apr;44(8):2629-37. doi: 10.1016/j.watres.2010.01.018. Epub 2010 Jan 29.
2
Estimating true human and animal host source contribution in quantitative microbial source tracking using the Monte Carlo method.利用蒙特卡罗方法估算定量微生物源追踪中真实的人类和动物宿主源贡献。
Water Res. 2010 Sep;44(16):4760-75. doi: 10.1016/j.watres.2010.07.076. Epub 2010 Aug 13.
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Microbial source tracking in a rural watershed dominated by cattle.以牛为主导的农村流域中的微生物源追踪
Water Res. 2007 Aug;41(16):3729-39. doi: 10.1016/j.watres.2007.04.020. Epub 2007 May 1.
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Microbial source tracking: a forensic technique for microbial source identification?微生物溯源:一种用于微生物来源鉴定的法医技术?
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Source specific fecal bacteria modeling using soil and water assessment tool model.使用土壤和水评估工具模型进行源特异性粪便细菌建模。
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Determining the source of fecal contamination in recreational waters.确定娱乐用水中粪便污染的来源。
J Environ Health. 2005 Jul-Aug;68(1):25-30.
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Identifying fecal sources in a selected catchment reach using multiple source-tracking tools.使用多种源追踪工具在选定集水区河段识别粪便来源。
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A comparison of ARA and DNA data for microbial source tracking based on source-classification models developed using classification trees.基于使用分类树开发的源分类模型,对用于微生物源追踪的ARA和DNA数据进行比较。
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引用本文的文献

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Bioinformatics. 2024 Jun 28;40(Suppl 1):i68-i78. doi: 10.1093/bioinformatics/btae227.
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FEAST: fast expectation-maximization for microbial source tracking.FEAST:用于微生物溯源的快速期望最大化算法。
Nat Methods. 2019 Jul;16(7):627-632. doi: 10.1038/s41592-019-0431-x. Epub 2019 Jun 10.
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Quantification of Microbial Source Tracking and Pathogenic Bacterial Markers in Water and Sediments of Tiaoxi River (Taihu Watershed).
苕溪(太湖流域)水体和沉积物中微生物源追踪及致病细菌标志物的定量分析
Front Microbiol. 2019 Apr 24;10:699. doi: 10.3389/fmicb.2019.00699. eCollection 2019.
4
Bayesian community-wide culture-independent microbial source tracking.贝叶斯社区范围的非培养微生物溯源。
Nat Methods. 2011 Jul 17;8(9):761-3. doi: 10.1038/nmeth.1650.