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Dynamic PER repression mechanisms in the Drosophila circadian clock: from on-DNA to off-DNA.
Genes Dev. 2010 Feb 15;24(4):358-67. doi: 10.1101/gad.1883910.
2
CLOCKWORK ORANGE Enhances PERIOD Mediated Rhythms in Transcriptional Repression by Antagonizing E-box Binding by CLOCK-CYCLE.
PLoS Genet. 2016 Nov 4;12(11):e1006430. doi: 10.1371/journal.pgen.1006430. eCollection 2016 Nov.
3
CLOCK deubiquitylation by USP8 inhibits CLK/CYC transcription in Drosophila.
Genes Dev. 2012 Nov 15;26(22):2536-49. doi: 10.1101/gad.200584.112.
4
CLOCKWORK ORANGE promotes CLOCK-CYCLE activation via the putative Drosophila ortholog of CLOCK INTERACTING PROTEIN CIRCADIAN.
Curr Biol. 2021 Oct 11;31(19):4207-4218.e4. doi: 10.1016/j.cub.2021.07.017. Epub 2021 Jul 30.
7
Circadian transcription contributes to core period determination in Drosophila.
PLoS Biol. 2008 May 20;6(5):e119. doi: 10.1371/journal.pbio.0060119.
8
Genetic analysis of ectopic circadian clock induction in Drosophila.
J Biol Rhythms. 2009 Oct;24(5):368-78. doi: 10.1177/0748730409343761.
9
AMP-Activated Protein Kinase Regulates Circadian Rhythm by Affecting CLOCK in .
J Neurosci. 2019 May 1;39(18):3537-3550. doi: 10.1523/JNEUROSCI.2344-18.2019. Epub 2019 Feb 28.

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1
peptidyl-prolyl isomerase-like 4 regulates circadian rhythm by supporting high-amplitude oscillations of PERIOD.
iScience. 2025 Apr 16;28(5):112457. doi: 10.1016/j.isci.2025.112457. eCollection 2025 May 16.
2
Upstream open reading frames dynamically modulate CLOCK protein translation to regulate circadian rhythms and sleep.
PLoS Biol. 2025 May 12;23(5):e3003173. doi: 10.1371/journal.pbio.3003173. eCollection 2025 May.
3
Alternative splicing of transcript mediates the response of circadian clocks to temperature changes.
Proc Natl Acad Sci U S A. 2024 Dec 10;121(50):e2410680121. doi: 10.1073/pnas.2410680121. Epub 2024 Dec 4.
5
Phosphorylation of DNA-binding domains of CLOCK-BMAL1 complex for PER-dependent inhibition in circadian clock of mammalian cells.
Proc Natl Acad Sci U S A. 2024 Jun 4;121(23):e2316858121. doi: 10.1073/pnas.2316858121. Epub 2024 May 28.
6
Alternative splicing of transcript mediates the response of circadian clocks to temperature changes.
bioRxiv. 2024 May 12:2024.05.10.593646. doi: 10.1101/2024.05.10.593646.
7
A robust ultrasensitive transcriptional switch in noisy cellular environments.
NPJ Syst Biol Appl. 2024 Mar 16;10(1):30. doi: 10.1038/s41540-024-00356-2.
8
miR-277 regulates the phase of circadian activity-rest rhythm in .
Front Physiol. 2023 Nov 28;14:1082866. doi: 10.3389/fphys.2023.1082866. eCollection 2023.
9
Are circadian amplitudes and periods correlated? A new twist in the story.
F1000Res. 2024 Apr 23;12:1077. doi: 10.12688/f1000research.135533.1. eCollection 2023.
10
CLOCK and TIMELESS regulate rhythmic occupancy of the BRAHMA chromatin-remodeling protein at clock gene promoters.
PLoS Genet. 2023 Feb 21;19(2):e1010649. doi: 10.1371/journal.pgen.1010649. eCollection 2023 Feb.

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2
Activity of the circadian transcription factor White Collar Complex is modulated by phosphorylation of SP-motifs.
FEBS Lett. 2009 Jun 18;583(12):1833-40. doi: 10.1016/j.febslet.2009.04.042. Epub 2009 May 8.
3
Roles of CLOCK phosphorylation in suppression of E-box-dependent transcription.
Mol Cell Biol. 2009 Jul;29(13):3675-86. doi: 10.1128/MCB.01864-08. Epub 2009 May 4.
4
CK2alpha phosphorylates BMAL1 to regulate the mammalian clock.
Nat Struct Mol Biol. 2009 Apr;16(4):446-8. doi: 10.1038/nsmb.1578. Epub 2009 Mar 29.
7
Closing the circadian negative feedback loop: FRQ-dependent clearance of WC-1 from the nucleus.
Genes Dev. 2008 Nov 15;22(22):3196-204. doi: 10.1101/gad.1706908. Epub 2008 Nov 7.
8
Circadian transcription contributes to core period determination in Drosophila.
PLoS Biol. 2008 May 20;6(5):e119. doi: 10.1371/journal.pbio.0060119.
9
Rhythmic E-box binding by CLK-CYC controls daily cycles in per and tim transcription and chromatin modifications.
Mol Cell Biol. 2008 Jul;28(14):4642-52. doi: 10.1128/MCB.01612-07. Epub 2008 May 12.
10
Promoter-proximal Pol II: when stalling speeds things up.
Cell Cycle. 2008 Jun 1;7(11):1539-44. doi: 10.4161/cc.7.11.6006. Epub 2008 Mar 27.

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