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固氮酶 FNR(还原态)/FNR(氧化态)与 NADP+/H 间氢化物转移的机制。采用多维隧道研究的预稳态动力学/集合平均过渡态理论的联合研究。

Mechanism of the hydride transfer between Anabaena Tyr303Ser FNR(rd)/FNR(ox) and NADP+/H. A combined pre-steady-state kinetic/ensemble-averaged transition-state theory with multidimensional tunneling study.

机构信息

Departamento de Bioquímica y Biología Molecular y Celular, Facultad de Ciencias, and Institute of Biocomputation and Physics of Complex Systems (BIFI), Universidad de Zaragoza, E-50009 Zaragoza, Spain.

出版信息

J Phys Chem B. 2010 Mar 11;114(9):3368-79. doi: 10.1021/jp912034m.

Abstract

The flavoenzyme ferredoxin-NADP(+) reductase (FNR) catalyzes the production of NADPH during photosynthesis. The hydride-transfer reactions between the Anabaena mutant Tyr303Ser FNR(rd)/FNR(ox) and NADP(+)/H have been studied both experimentally and theoretically. Stopped-flow pre-steady-state kinetic measurements have shown that, in contrast to that observed for WT FNR, the physiological hydride transfer from Tyr303Ser FNR(rd) to NADP(+) does not occur. Conversely, the reverse reaction does take place with a rate constant just slightly slower than for WT FNR. This latter process shows temperature-dependent rates, but essentially temperature independent kinetic isotope effects, suggesting the reaction takes place following the vibration-driven tunneling model. In turn, ensemble-averaged variational transition-state theory with multidimensional tunneling calculations provide reaction rate constant values and kinetic isotope effects that agree with the experimental results, the experimental and the theoretical values for the reverse process being noticeably similar. The reaction mechanism behind these hydride transfers has been analyzed. The formation of a close contact ionic pair FADH(-):NADP(+) surrounded by the polar environment of the enzyme in the reactant complex of the mutant might be the cause of the huge difference between the direct and the reverse reaction.

摘要

黄素酶铁氧还蛋白-NADP(+)还原酶(FNR)在光合作用过程中催化 NADPH 的生成。已经从实验和理论两个方面研究了 Anabaena 突变体 Tyr303Ser FNR(rd)/FNR(ox)与 NADP(+)/H 之间的氢转移反应。停流预稳态动力学测量表明,与 WT FNR 观察到的情况相反,Tyr303Ser FNR(rd)向 NADP(+)的生理氢转移不会发生。相反,该逆反应确实以仅略慢于 WT FNR 的速率常数发生。后一过程表现出与温度相关的速率,但基本上与温度无关的动力学同位素效应,表明反应遵循振动驱动隧穿模型。反过来,具有多维隧穿计算的集合平均变分过渡态理论提供了与实验结果一致的反应速率常数值和动力学同位素效应,反向过程的实验值和理论值非常相似。分析了这些氢转移背后的反应机制。在反应物复合物中,突变体周围的极性环境中形成了紧密接触的离子对 FADH(-):NADP(+),这可能是直接和逆反应之间巨大差异的原因。

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