• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于梯度的多构型谢巴德插值法生成多原子反应势能面。

Gradient-based multiconfiguration Shepard interpolation for generating potential energy surfaces for polyatomic reactions.

机构信息

Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431, USA.

出版信息

J Chem Phys. 2010 Feb 28;132(8):084109. doi: 10.1063/1.3310296.

DOI:10.1063/1.3310296
PMID:20192292
Abstract

This paper describes and illustrates a way to construct multidimensional representations of reactive potential energy surfaces (PESs) by a multiconfiguration Shepard interpolation (MCSI) method based only on gradient information, that is, without using any Hessian information from electronic structure calculations. MCSI, which is called multiconfiguration molecular mechanics (MCMM) in previous articles, is a semiautomated method designed for constructing full-dimensional PESs for subsequent dynamics calculations (classical trajectories, full quantum dynamics, or variational transition state theory with multidimensional tunneling). The MCSI method is based on Shepard interpolation of Taylor series expansions of the coupling term of a 2 x 2 electronically diabatic Hamiltonian matrix with the diagonal elements representing nonreactive analytical PESs for reactants and products. In contrast to the previously developed method, these expansions are truncated in the present version at the first order, and, therefore, no input of electronic structure Hessians is required. The accuracy of the interpolated energies is evaluated for two test reactions, namely, the reaction OH+H(2)-->H(2)O+H and the hydrogen atom abstraction from a model of alpha-tocopherol by methyl radical. The latter reaction involves 38 atoms and a 108-dimensional PES. The mean unsigned errors averaged over a wide range of representative nuclear configurations (corresponding to an energy range of 19.5 kcal/mol in the former case and 32 kcal/mol in the latter) are found to be within 1 kcal/mol for both reactions, based on 13 gradients in one case and 11 in the other. The gradient-based MCMM method can be applied for efficient representations of multidimensional PESs in cases where analytical electronic structure Hessians are too expensive or unavailable, and it provides new opportunities to employ high-level electronic structure calculations for dynamics at an affordable cost.

摘要

本文描述并说明了一种基于梯度信息而无需使用电子结构计算中的任何 Hessian 信息的多组态 Shepard 插值(MCSI)方法来构建反应势能面(PES)的多维表示的方法。MCSI 在前几篇文章中被称为多组态分子力学(MCMM),它是一种半自动方法,用于构建全维 PES,以便进行后续动力学计算(经典轨迹、全量子动力学或多维隧穿的变分过渡态理论)。MCSI 方法基于 2 x 2 电子离绝热哈密顿矩阵的耦合项的 Shepard 插值,该矩阵的对角元素代表反应物和产物的非反应分析 PES。与以前开发的方法不同,在当前版本中,这些展开式在一阶截断,因此不需要输入电子结构 Hessians。对于两个测试反应,即 OH+H(2)-->H(2)O+H 和从模型中提取氢自由基的阿尔法生育酚的氢原子,评估了插值能量的准确性。后者反应涉及 38 个原子和一个 108 维 PES。在广泛的代表性核构型范围内(分别对应于前一种情况的 19.5 kcal/mol 和后一种情况的 32 kcal/mol 的能量范围),基于一种情况下的 13 个梯度和另一种情况下的 11 个梯度,发现平均未签名误差在两种情况下均在 1 kcal/mol 以内。基于梯度的 MCMM 方法可用于在分析电子结构 Hessians 过于昂贵或不可用时有效地表示多维 PES,并且为以可承受的成本使用高级电子结构计算进行动力学提供了新的机会。

相似文献

1
Gradient-based multiconfiguration Shepard interpolation for generating potential energy surfaces for polyatomic reactions.基于梯度的多构型谢巴德插值法生成多原子反应势能面。
J Chem Phys. 2010 Feb 28;132(8):084109. doi: 10.1063/1.3310296.
2
Efficient global representations of potential energy functions: trajectory calculations of bimolecular gas-phase reactions by multiconfiguration molecular mechanics.势能函数的高效全局表示:多构型分子力学对双分子气相反应的轨迹计算
J Chem Phys. 2009 Jan 14;130(2):024105. doi: 10.1063/1.3042145.
3
Optimizing the performance of the multiconfiguration molecular mechanics method.优化多构型分子力学方法的性能。
J Phys Chem A. 2006 Dec 21;110(50):13530-6. doi: 10.1021/jp0640833.
4
Multiconfiguration Molecular Mechanics Based on Combined Quantum Mechanical and Molecular Mechanical Calculations.基于量子力学与分子力学联合计算的多构型分子力学
J Chem Theory Comput. 2006 Sep;2(5):1237-54. doi: 10.1021/ct600171u.
5
Dynamics of the concerted triple proton transfer in cyclic water trimer using the multiconfiguration molecular mechanics algorithm.使用多组态分子力学算法研究环状三聚体水中协同三质子转移的动力学
J Phys Chem A. 2006 Jan 19;110(2):600-8. doi: 10.1021/jp0530193.
6
A local interpolation scheme using no derivatives in potential sampling: application to O(1D) + H2 system.一种在势能采样中不使用导数的局部插值方案:应用于O(1D)+H2系统。
J Comput Chem. 2003 Jul 15;24(9):1077-86. doi: 10.1002/jcc.10252.
7
Application of the modified Shepard interpolation method to the determination of the potential energy surface for a molecule-surface reaction: H2 + Pt(111).修正的谢泼德插值方法在确定分子-表面反应H₂ + Pt(111)势能面中的应用
J Chem Phys. 2004 Feb 1;120(5):2392-404. doi: 10.1063/1.1637337.
8
A hierarchy of potential energy surfaces constructed from energies and energy derivatives calculated on grids.
J Chem Phys. 2009 Apr 7;130(13):134104. doi: 10.1063/1.3092921.
9
Interpolating moving least-squares methods for fitting potential energy surfaces: computing high-density potential energy surface data from low-density ab initio data points.用于拟合势能面的插值移动最小二乘法:从低密度从头算数据点计算高密度势能面数据。
J Chem Phys. 2007 May 14;126(18):184108. doi: 10.1063/1.2730798.
10
Variational transition state theory calculations for the rate constants of the hydrogen scrambling and the dissociation of BH5 using the multiconfiguration molecular mechanics algorithm.使用多组态分子力学算法对BH₅的氢重排和解离速率常数进行变分过渡态理论计算。
J Chem Phys. 2004 Jan 8;120(2):623-30. doi: 10.1063/1.1630305.

引用本文的文献

1
Concerted hydrogen atom and electron transfer mechanism for catalysis by lysine-specific demethylase.赖氨酸特异性去甲基酶催化的协同氢原子和电子转移机制。
J Phys Chem B. 2013 Jul 18;117(28):8422-9. doi: 10.1021/jp404292t. Epub 2013 Jun 14.