Structural Biology Laboratory, The Salk Institute for Biological Studies, 10010 North Torrey Pines Rd., La Jolla, California 92037, USA.
Protein Sci. 2010 May;19(5):1117-25. doi: 10.1002/pro.369.
The endogenous Escherichia coli porin OmpF was crystallized as an accidental by-product of our efforts to express, purify, and crystallize the E. coli integral membrane protein KdpD in the presence of foscholine-12 (FC12). FC12 is widely used in membrane protein studies, but no crystal structure of a protein that was both purified and crystallized with this detergent has been reported in the Protein Data Bank. Crystallization screening for KdpD yielded two different crystals of contaminating protein OmpF. Here, we report two OmpF structures, the first membrane protein crystal structures for which extraction, purification, and crystallization were done exclusively with FC12. The first structure was refined in space group P21 with cell parameters a = 136.7 A, b = 210.5 A, c = 137 A, and beta = 100.5 degrees , and the resolution of 3.8 A. The second structure was solved at the resolution of 4.4 A and was refined in the P321 space group, with unit cell parameters a = 215.5 A, b = 215.5 A, c = 137.5 A, and gamma = 120 degrees . Both crystal forms show novel crystal packing, in which the building block is a tetrahedral arrangement of four trimers. Additionally, we discuss the use of FC12 for membrane protein crystallization and structure determination, as well as the problem of the OmpF contamination for membrane proteins overexpressed in E. coli.
内源性大肠杆菌通道蛋白 OmpF 是我们在表达、纯化和结晶大肠杆菌整合膜蛋白 KdpD 的过程中意外产生的副产物。FC12 广泛应用于膜蛋白研究,但在蛋白质数据库中没有报道过用这种去污剂同时纯化和结晶的蛋白质的晶体结构。KdpD 的结晶筛选产生了两种不同的污染蛋白 OmpF 晶体。在这里,我们报告了两个 OmpF 结构,这是第一个完全用 FC12 提取、纯化和结晶的膜蛋白晶体结构。第一个结构在 P21 空间群中进行了细化,其细胞参数为 a = 136.7 A、b = 210.5 A、c = 137 A 和 beta = 100.5 度,分辨率为 3.8 A。第二个结构在分辨率为 4.4 A 时被解决,并在 P321 空间群中进行了细化,其单元细胞参数为 a = 215.5 A、b = 215.5 A、c = 137.5 A 和 gamma = 120 度。这两种晶体形式都显示出新颖的晶体堆积,其中构建块是四个三聚体的四面体排列。此外,我们还讨论了 FC12 用于膜蛋白结晶和结构测定的问题,以及在大肠杆菌中过度表达的膜蛋白的 OmpF 污染问题。