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通过体外选择增强一组共价自组装、自我重组 RNA 的益生元相关性。

Enhancing the prebiotic relevance of a set of covalently self-assembling, autorecombining RNAs through in vitro selection.

机构信息

Department of Chemistry, Portland State University, OR 97207, USA.

出版信息

J Mol Evol. 2010 Mar;70(3):233-41. doi: 10.1007/s00239-010-9325-3. Epub 2010 Mar 3.

DOI:10.1007/s00239-010-9325-3
PMID:20198367
Abstract

An in vitro form of the self-splicing group-I intron interrupting the Azoarcus tRNA(Ile) was shortened by ~10% with the removal of helix P6a. This deletion reduced the reverse-splicing activity of the ribozyme about 10-fold. Through in vitro selection, this activity was restored in several low-error mutants. A number of mutations were found that improved reverse-splicing activity through both increased k (obs) and better folding. The deletion mutant could be fragmented into as many as three discrete pieces, which, when incubated together, were capable of covalent self-assembly through energy-neutral transesterification reactions, a process called autorecombination. A subset of the mutations identified through in vitro selection for reverse-splicing were exaptations in that they were also shown to augment the autorecombination reactions, leading to higher yields of covalently self-assembled products, making this the smallest such system yet discovered.

摘要

体外自剪接组 I 内含子的一种形式通过去除 P6a 螺旋将自身缩短了约 10%。该缺失使核酶的反向剪接活性降低了约 10 倍。通过体外选择,在几个低错误突变体中恢复了该活性。发现了许多突变,通过增加 k(obs)和更好的折叠提高了反向剪接活性。缺失突变体可以被分割成多达三个离散的片段,这些片段在孵育时可以通过能量中性的酯交换反应进行共价自组装,这一过程称为自重组。通过体外选择反向剪接来鉴定的一组突变是适应,因为它们也被证明可以增强自重组反应,从而产生更高产量的共价自组装产物,这使得该系统成为迄今为止发现的最小的系统。

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