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设计在水中显示氢键约束的短线性肽。

Design of short linear peptides that show hydrogen bonding constraints in water.

机构信息

Center for Advanced Drug Research (CADRE), SRI International, Harrisonburg, Virginia 22802, USA.

出版信息

J Am Chem Soc. 2010 Apr 7;132(13):4508-9. doi: 10.1021/ja905341p.

Abstract

Using a combination of an aromatic amino acid, a homoserine side chain, and a d-amino acid, a series of linear tetrapeptides were designed that adopt an "Hse turn" in water. The conformation was stabilized by intramolecular hydrogen bonds even in the presence of surrounding water molecules. In particular, the peptide with sequence H-Abz-Homoser-Ser-d-Gln-NH(2) showed significant through-space interactions and its free energy of folding is estimated to be on the order of -4 kcal/mol. We report the design of the tetrapeptides using a novel mimicry approach and their characterization based on NMR spectroscopy and MD simulations.

摘要

采用芳香族氨基酸、同型丝氨酸侧链和 D-氨基酸的组合,设计了一系列线性四肽,这些四肽在水中采用“Hse 转角”构象。即使在存在周围水分子的情况下,构象也通过分子内氢键稳定。特别是,具有序列 H-Abz-Homoser-Ser-d-Gln-NH(2) 的肽显示出显著的贯穿空间相互作用,其折叠自由能估计约为-4 kcal/mol。我们报告了使用新型模拟方法设计四肽及其基于 NMR 光谱和 MD 模拟的特性。

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