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由功能性三氨基酸控制的折叠体:α/γ-杂合寡肽的结构研究

Foldamers controlled by functional triamino acids: structural investigation of α/γ-hybrid oligopeptides.

作者信息

Just David, Palivec Vladimír, Bártová Kateřina, Bednárová Lucie, Pazderková Markéta, Císařová Ivana, Martinez-Seara Hector, Jahn Ullrich

机构信息

Institute of Organic Chemistry and Biochemistry, Czech Academy of Sciences, Flemingovo náměstí 2, 16610, Prague 6, Czech Republic.

Department of Inorganic Chemistry, Faculty of Science, Charles University in Prague, Hlavova 2030/8, 12843, Prague 2, Czech Republic.

出版信息

Commun Chem. 2024 May 25;7(1):114. doi: 10.1038/s42004-024-01201-7.

DOI:10.1038/s42004-024-01201-7
PMID:38796536
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11128005/
Abstract

Peptide-like foldamers controlled by normal amide backbone hydrogen bonding have been extensively studied, and their folding patterns largely rely on configurational and conformational constraints induced by the steric properties of backbone substituents at appropriate positions. In contrast, opportunities to influence peptide secondary structure by functional groups forming individual hydrogen bond networks have not received much attention. Here, peptide-like foldamers consisting of alternating α,β,γ-triamino acids 3-amino-4-(aminomethyl)-2-methylpyrrolidine-3-carboxylate (AAMP) and natural amino acids glycine and alanine are reported, which were obtained by solution phase peptide synthesis. They form ordered secondary structures, which are dominated by a three-dimensional bridged triazaspiranoid-like hydrogen bond network involving the non-backbone amino groups, the backbone amide hydrogen bonds, and the relative configuration of the α,β,γ-triamino and α-amino acid building blocks. This additional stabilization leads to folding in both nonpolar organic as well as in aqueous environments. The three-dimensional arrangement of the individual foldamers is supported by X-ray crystallography, NMR spectroscopy, chiroptical methods, and molecular dynamics simulations.

摘要

由正常酰胺主链氢键控制的类肽折叠体已得到广泛研究,其折叠模式很大程度上依赖于在适当位置的主链取代基的空间性质所诱导的构型和构象限制。相比之下,通过形成单个氢键网络的官能团来影响肽二级结构的机会尚未受到太多关注。在此,报道了由交替的α,β,γ-三氨基酸3-氨基-4-(氨甲基)-2-甲基吡咯烷-3-羧酸酯(AAMP)与天然氨基酸甘氨酸和丙氨酸组成的类肽折叠体,它们通过溶液相肽合成获得。它们形成有序的二级结构,其主要由涉及非主链氨基、主链酰胺氢键以及α,β,γ-三氨基酸和α-氨基酸构建单元的相对构型的三维桥连三氮杂螺环类氢键网络主导。这种额外的稳定性导致在非极性有机环境以及水性环境中均发生折叠。通过X射线晶体学、核磁共振光谱、手性光学方法和分子动力学模拟对各个折叠体的三维排列进行了证实。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/2b7762f05451/42004_2024_1201_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/74e776ab846a/42004_2024_1201_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/ffd2a739ebcf/42004_2024_1201_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/85f093fc6b8c/42004_2024_1201_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/f15d472699fc/42004_2024_1201_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/16e7c4331f44/42004_2024_1201_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/a5c2a473a45e/42004_2024_1201_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/2b7762f05451/42004_2024_1201_Fig7_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/74e776ab846a/42004_2024_1201_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/ffd2a739ebcf/42004_2024_1201_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/85f093fc6b8c/42004_2024_1201_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/f15d472699fc/42004_2024_1201_Fig4_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/16e7c4331f44/42004_2024_1201_Fig5_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/a5c2a473a45e/42004_2024_1201_Fig6_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/45fd/11128005/2b7762f05451/42004_2024_1201_Fig7_HTML.jpg

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本文引用的文献

1
Effect of a -4-aminopiperidine-3-carboxylic acid (-APiC) residue on mixed-helical folding of unnatural peptides.-4-氨基哌啶-3-羧酸(-APiC)残基对非天然肽混合螺旋折叠的影响。
Org Biomol Chem. 2022 Jan 19;20(3):613-618. doi: 10.1039/d1ob02223g.
2
Synthesis and conformation of backbone N-aminated peptides.主链 N-氨甲酰化肽的合成与构象。
Methods Enzymol. 2021;656:271-294. doi: 10.1016/bs.mie.2021.04.013. Epub 2021 May 5.
3
Stabilization of Azapeptides by N···H-N Hydrogen Bonds.氮···氢键稳定氮杂肽。
Org Lett. 2021 Jul 2;23(13):4949-4954. doi: 10.1021/acs.orglett.1c01111. Epub 2021 Jun 1.
4
α,β-Unsaturated γ-Peptide Foldamers.α,β-不饱和γ-肽折叠体
Chempluschem. 2021 Apr 1;86(4):629-645. doi: 10.1002/cplu.202100045.
5
Helical Antimicrobial Peptide Foldamers Containing Non-proteinogenic Amino Acids.含非天然氨基酸的螺旋抗菌肽类聚合物。
ChemMedChem. 2021 Apr 20;16(8):1226-1233. doi: 10.1002/cmdc.202000940. Epub 2021 Feb 10.
6
Foldamer Catalysis.折叠体催化。
J Am Chem Soc. 2020 Oct 14;142(41):17211-17223. doi: 10.1021/jacs.0c07347. Epub 2020 Sep 29.
7
The Diverse World of Foldamers: Endless Possibilities of Self-Assembly.《分子自组装的多样性世界:无穷无尽的可能性》
Molecules. 2020 Jul 18;25(14):3276. doi: 10.3390/molecules25143276.
8
Local versus Global Control of Helical Folding in β-Peptide Segments Using Hydrazino Turns.使用肼基转角对β - 肽段中螺旋折叠的局部与全局控制
J Org Chem. 2020 May 1;85(9):6165-6171. doi: 10.1021/acs.joc.0c00305. Epub 2020 Apr 14.
9
Organocatalytic Access to a -Cyclopentyl-γ-amino Acid: An Intriguing Model of Selectivity and Formation of a Stable 10/12-Helix from the Corresponding γ/α-Peptide.有机催化合成 α-环戊基-γ-氨基酸:对相应 γ/α-肽形成稳定的 10/12-螺旋的选择性和形成的有趣模型。
J Am Chem Soc. 2020 Jan 22;142(3):1382-1393. doi: 10.1021/jacs.9b10861. Epub 2019 Dec 23.
10
Overall Shape Constraint of Alternating α/β-Hybrid Peptides Containing Bicyclic β-Proline.含双环β-脯氨酸的交替α/β-杂合肽的整体形状约束。
Org Lett. 2019 Oct 4;21(19):7813-7817. doi: 10.1021/acs.orglett.9b02799. Epub 2019 Sep 13.