The Pfizer Institute for Pharmaceutical Materials Science, The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge, CB2 1EZ, UK.
J Comput Aided Mol Des. 2010 Jun;24(6-7):575-86. doi: 10.1007/s10822-010-9345-5. Epub 2010 Apr 3.
The use of MP2 level quantum mechanical (QM) calculations on isolated heteroaromatic ring systems for the prediction of the tautomeric propensities of whole molecules in a crystalline environment was examined. A Polarisable Continuum Model was used in the calculations to account for environment effects on the tautomeric relative stabilities. The calculated relative energies of tautomers were compared to relative abundances within the Cambridge Structural Database (CSD) and the Protein Data Bank (PDB). The work was focussed on 84 annular tautomeric forms of 34 common ring systems. Good agreement was found between the calculations and the experimental data even if the quantity of these data was limited in many cases. The QM results were compared to those produced by much faster semiempirical calculations. In a search for other sources of the useful experimental data, the relative numbers of known compounds in which prototropic positions were often substituted by heavy atoms were also analysed. A scheme which groups all annular tautomeric transformations into 10 classes was developed. The scheme was designed to encompass a comprehensive set of known and theoretically possible tautomeric ring systems generated as part of a previous study. General trends across analogous ring systems were detected as a result. The calculations and statistics collected on crystallographic data as well as the general trends observed should be useful for the better modelling of annular tautomerism in the applications such as computer-aided drug design, small molecule crystal structure prediction, the naming of compounds and the interpretation of protein-small molecule crystal structures.
本文考察了在晶体环境中预测整个分子互变异构倾向时,使用孤立杂芳环系统的 MP2 水平量子力学(QM)计算方法。在计算中使用了极化连续体模型来解释环境对互变异构相对稳定性的影响。将计算得到的互变异构体的相对能与剑桥结构数据库(CSD)和蛋白质数据库(PDB)中的相对丰度进行了比较。该工作主要集中在 34 个常见环系统的 84 个环状互变异构形式上。即使在许多情况下这些数据的数量有限,计算结果与实验数据之间仍存在良好的一致性。将 QM 结果与更快的半经验计算结果进行了比较。为了寻找其他有用实验数据的来源,还分析了已知化合物中经常用重原子取代质子化位置的相对数量。开发了一种将所有环状互变异构转化分为 10 类的方案。该方案旨在涵盖之前研究中生成的一套全面的已知和理论上可能的互变异构环系统。结果检测到了类似环系统中的一般趋势。在晶体学数据上进行的计算和统计以及观察到的一般趋势对于更好地模拟环状互变异构在计算机辅助药物设计、小分子晶体结构预测、化合物命名和蛋白质-小分子晶体结构解释等应用中非常有用。