Suppr超能文献

互变异构体数据库:互变异构分析的综合资源。

Tautomer Database: A Comprehensive Resource for Tautomerism Analyses.

机构信息

Computer-Aided Drug Design Group, Chemical Biology Laboratory, Center for Cancer Research, National Cancer Institute, NIH, Frederick, Maryland 21702, United States.

出版信息

J Chem Inf Model. 2020 Mar 23;60(3):1090-1100. doi: 10.1021/acs.jcim.9b01156. Epub 2020 Mar 10.

Abstract

We report a database of tautomeric structures that contains 2819 tautomeric tuples extracted from 171 publications. Each tautomeric entry has been annotated with experimental conditions reported in the respective publication, plus bibliographic details, structural identifiers (e.g., NCI/CADD identifiers FICTS, FICuS, uuuuu, and Standard InChI), and chemical information (e.g., SMILES, molecular weight). The majority of tautomeric tuples found were pairs; the remaining 10% were triples, quadruples, or quintuples, amounting to a total number of structures of 5977. The types of tautomerism were mainly prototropic tautomerism (79%), followed by ring-chain (13%) and valence tautomerism (8%). The experimental conditions reported in the publications included about 50 pure solvents and 9 solvent mixtures with 26 unique spectroscopic or nonspectroscopic methods. H and C NMR were the most frequently used methods. A total of 77 different tautomeric transform rules (SMIRKS) are covered by at least one example tuple in the database. This database is freely available as a spreadsheet at https://cactus.nci.nih.gov/download/tautomer/.

摘要

我们报告了一个包含 2819 个由 171 篇文献中提取的互变异构结构的数据库。每个互变异构条目都标注了相应文献中报告的实验条件,以及书目详细信息、结构标识符(例如,NCI/CADD 标识符 FICTS、FICuS、uuuuu 和标准 InChI)和化学信息(例如,SMILES、分子量)。找到的互变异构对主要是质子转移互变异构(79%),其次是环链(13%)和价互变异构(8%)。文献中报告的实验条件包括约 50 种纯溶剂和 9 种溶剂混合物,以及 26 种独特的光谱或非光谱方法。1H 和 13C NMR 是最常用的方法。该数据库至少涵盖了一个示例元组中的 77 种不同的互变异构转换规则(SMIRKS)。该数据库可在 https://cactus.nci.nih.gov/download/tautomer/ 作为电子表格免费获取。

相似文献

1
Tautomer Database: A Comprehensive Resource for Tautomerism Analyses.互变异构体数据库:互变异构分析的综合资源。
J Chem Inf Model. 2020 Mar 23;60(3):1090-1100. doi: 10.1021/acs.jcim.9b01156. Epub 2020 Mar 10.
3
Tautomerism in large databases.大分子数据库中的互变异构现象。
J Comput Aided Mol Des. 2010 Jun;24(6-7):521-51. doi: 10.1007/s10822-010-9346-4. Epub 2010 May 29.
4
Tautomeric Conflicts in Forty Small-Molecule Databases.四十个小分子数据库中的互变异构冲突。
J Chem Inf Model. 2024 Oct 14;64(19):7409-7421. doi: 10.1021/acs.jcim.4c00700. Epub 2024 Sep 24.
6
Enumeration of ring-chain tautomers based on SMIRKS rules.基于SMIRKS规则的环链互变异构体计数
J Chem Inf Model. 2014 Sep 22;54(9):2423-32. doi: 10.1021/ci500363p. Epub 2014 Sep 9.
8
Annular tautomerism: experimental observations and quantum mechanics calculations.环状互变异构:实验观察和量子力学计算。
J Comput Aided Mol Des. 2010 Jun;24(6-7):575-86. doi: 10.1007/s10822-010-9345-5. Epub 2010 Apr 3.
9
Batch tautomer generation with MolTPC.使用MolTPC进行批量互变异构体生成。
J Comput Chem. 2013 Oct 30;34(28):2485-92. doi: 10.1002/jcc.23397. Epub 2013 Aug 2.
10
Handling of tautomerism and stereochemistry in compound registration.化合物注册中互变异构和立体化学的处理。
J Chem Inf Model. 2012 Feb 27;52(2):285-92. doi: 10.1021/ci200330x. Epub 2011 Dec 28.

引用本文的文献

1
Representation of Molecules by Sequences of Instructions.通过指令序列对分子进行表示。
J Chem Inf Model. 2025 Aug 11;65(15):7936-7955. doi: 10.1021/acs.jcim.5c00354. Epub 2025 Jul 28.
3
Software Infrastructure for Next-Generation QM/MM-ΔMLP Force Fields.用于下一代QM/MM-ΔMLP力场的软件基础设施。
J Phys Chem B. 2024 Jul 4;128(26):6257-6271. doi: 10.1021/acs.jpcb.4c01466. Epub 2024 Jun 21.

本文引用的文献

2
: An Open Tautomer Database.: 一个开放的互变异构体数据库。
J Chem Inf Model. 2020 Mar 23;60(3):1085-1089. doi: 10.1021/acs.jcim.0c00035. Epub 2020 Jan 30.
3
Assessment of tautomer distribution using the condensed reaction graph approach.利用凝聚反应图方法评估互变异构体分布。
J Comput Aided Mol Des. 2018 Mar;32(3):401-414. doi: 10.1007/s10822-018-0101-6. Epub 2018 Jan 29.
7
Enumeration of ring-chain tautomers based on SMIRKS rules.基于SMIRKS规则的环链互变异构体计数
J Chem Inf Model. 2014 Sep 22;54(9):2423-32. doi: 10.1021/ci500363p. Epub 2014 Sep 9.
10
Let's not forget tautomers.让我们不要忘记互变异构体。
J Comput Aided Mol Des. 2009 Oct;23(10):693-704. doi: 10.1007/s10822-009-9303-2.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验