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机械探针揭示蛋白质自由能景观多维性的直接证据。

Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes.

作者信息

Yew Zu Thur, Schlierf Michael, Rief Matthias, Paci Emanuele

机构信息

Institute of Molecular and Cell Biology, University of Leeds, Leeds LS2 9JT, United Kingdom.

出版信息

Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Mar;81(3 Pt 1):031923. doi: 10.1103/PhysRevE.81.031923. Epub 2010 Mar 30.

Abstract

The study of mechanical unfolding, through the combined efforts of atomic force microscopy and simulation, is yielding fresh insights into the free-energy landscapes of proteins. Thus far, experiments have been mostly analyzed with one-dimensional models of the free-energy landscape. We show that as the two ends of a protein, filamin, are pulled apart at a speed tending to zero, the measured mechanical strength plateaus at approximately 30 pN instead of going toward zero, deviating from the Bell model. The deviation can only be explained by a switch between parallel pathways. Insightful analysis of mechanical unfolding kinetics needs to account for the multidimensionality of the free-energy landscapes of proteins, which are crucial for understanding the behavior of proteins under the small forces experienced in vivo.

摘要

通过原子力显微镜和模拟的共同努力,对机械展开的研究正在为蛋白质的自由能景观带来新的见解。到目前为止,实验大多是用自由能景观的一维模型进行分析的。我们表明,当细丝蛋白的两端以趋于零的速度拉开时,测得的机械强度稳定在约30皮牛,而不是趋于零,这与贝尔模型不同。这种偏差只能通过平行路径之间的转换来解释。对机械展开动力学的深入分析需要考虑蛋白质自由能景观的多维性,这对于理解蛋白质在体内所经历的小力作用下的行为至关重要。

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