Sharina S N, Kartavtsev Iu F
Genetika. 2010 Mar;46(3):401-7.
Seventeen nucleotide sequences of Co-1 gene from 13 Pleuronectiformes species and 2 Perciformes species served as the outgroup were examined. For divergence comparison, the initial stage involved calculation of pairwise p-distances for all investigated sequences. This allowed to evaluate the nucleotide diversity on four phylogenetically different levels: (1) intraspecific, (2) intrageneric, (3) intrafamilial, and (4) intraordinal. The values of p-distances for the Co-1 gene for the four mentioned categories were (1) 0.93 +/- 0.73%, (2) 11.72 +/- 1.86%, (3) 12.10 +/- 1.10%, and (4) 20.20 +/- 0.22%, respectively. An increase in the level of genetic divergence along with an enhancement in taxon rank was previously reported for different species, which might be explained by prevalence of geographic speciation model in nature. Phylogenetic trees were constructed using four approaches: maximum parsimony, Bayesian, maximum likelihood, and neighbor-joining. These trees demonstrated similar results confirming the monophyletic origin of the families studied. The examined representatives of the flatfish species and genera were shown to be sufficiently divergent genetically.
研究了13种鲽形目物种和2种鲈形目物种(作为外类群)的Co-1基因的17个核苷酸序列。为了进行分歧比较,初始阶段涉及计算所有研究序列的成对p距离。这使得能够在四个系统发育不同水平上评估核苷酸多样性:(1)种内,(2)属内,(3)科内,和(4)目内。上述四类Co-1基因的p距离值分别为(1)0.93±0.73%,(2)11.72±1.86%,(3)12.10±1.10%,和(4)20.20±0.22%。先前报道了不同物种随着分类单元等级的提高遗传分歧水平增加,这可能是由自然界中地理物种形成模式的普遍性所解释的。使用四种方法构建了系统发育树:最大简约法、贝叶斯法、最大似然法和邻接法。这些树显示了相似的结果,证实了所研究科的单系起源。所研究的比目鱼物种和属的代表在遗传上显示出足够的差异。