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泰国帕罗林蛋白(PARL)与 LHON 家族表达的全基因组连锁扫描和关联研究。

Genome-wide linkage scan and association study of PARL to the expression of LHON families in Thailand.

机构信息

Department of Biochemistry, Faculty of Medicine Siriraj Hospital, Mahidol University, Bangkok, 10700, Thailand.

出版信息

Hum Genet. 2010 Jul;128(1):39-49. doi: 10.1007/s00439-010-0821-8. Epub 2010 Apr 21.

DOI:10.1007/s00439-010-0821-8
PMID:20407791
Abstract

Leber hereditary optic neuropathy (LHON) is the most common mitochondrially inherited disease causing blindness, preferentially in young adult males. Most of the patients carry the G11778A mitochondrial DNA (mtDNA) mutation. However, the marked incomplete penetrance and the gender bias indicate some additional genetic and/or environmental factors to disease expression. Herein, we first conducted a genome-wide linkage scan with 400 microsatellite markers in 9 large Thai LHON G11778A pedigrees. Using an affecteds-only nonparametric linkage analysis, 4 regions on chromosomes 3, 12, 13 and 18 showed Zlr scores greater than 2 (P < 0.025), which is consistently significant across several linkage statistics. The most suggestive marker D3S1565 (Zlr > 2 in 10 of 16 allele sharing models tested) was then expanded to include the region 3q26.2-3q28 covering SLC7A14 (3q26.2), MFN1 (3q26.32), MRPL47 (3q26.33), MCCC1 (3q27.1), PARL (3q27.1) and OPA1 (3q28-q29). All of these candidate genes were selected from the Maestro database and had known to be localized in mitochondria. Sixty tag SNPs were genotyped in 86 cases, 211 of their relatives and 32 unrelated Thai controls, by multiplex-PCR-based Invader assay. Analyses using a powerful association testing tool that adjusts for relatedness (the M(QLS) statistic) showed the most evidence of association between two SNPs, rs3749446 and rs1402000 (located in PARL presenilins-associated rhomboid-like) and LHON expression (both P = 8.8 x 10(-5)). The mitochondrial PARL protease has been recently known to play a role with a dynamin-related OPA1 protein in preventing apoptotic events by slowing down the release of cytochrome c out of mitochondrial cristae junctions. Moreover, PARL is required to activate the intramembranous proteolyses resulting in the degradation of an accumulated pro-apoptotic protein in the outer mitochondrial membrane. Under these circumstances, variants of PARL are suggested to influence cell death by apoptosis which has long been believed to intrigue the neurodegeneration of LHON.

摘要

Leber 遗传性视神经病变(LHON)是最常见的线粒体遗传疾病,导致失明,主要发生在年轻成年男性中。大多数患者携带 G11778A 线粒体 DNA(mtDNA)突变。然而,明显的不完全外显率和性别偏见表明,疾病表达还存在一些其他遗传和/或环境因素。在此,我们首次对 9 个大型泰国 LHON G11778A 家系进行了全基因组连锁扫描,使用 400 个微卫星标记。采用受累者非参数连锁分析,染色体 3、12、13 和 18 上的 4 个区域显示 Zlr 评分大于 2(P < 0.025),这在几个连锁统计中均具有一致性。最有提示意义的标记 D3S1565(在 16 个等位基因共享模型测试中的 10 个中 Zlr > 2)随后扩展到包含 3q26.2-3q28 区域,该区域包含 SLC7A14(3q26.2)、MFN1(3q26.32)、MRPL47(3q26.33)、MCCC1(3q27.1)、PARL(3q27.1)和 OPA1(3q28-q29)。这些候选基因均选自 Maestro 数据库,并且已知位于线粒体中。通过多重 PCR 基于 Invader 检测,对 86 例病例、211 名亲属和 32 名无关的泰国对照进行了 60 个标签 SNP 的基因分型。使用一种强大的关联测试工具(调整亲缘关系的 M(QLS)统计量)进行分析,结果显示两个 SNP(位于 PARL 早老素相关的类菱形)rs3749446 和 rs1402000 与 LHON 表达之间存在最明显的关联(均 P = 8.8 x 10(-5))。最近发现,线粒体 PARL 蛋白酶与一种与 dynamin 相关的 OPA1 蛋白一起,通过减缓细胞色素 c 从线粒体嵴连接部释放,在防止细胞凋亡事件中发挥作用。此外,PARL 被需要激活跨膜蛋白水解,导致外线粒体膜中积累的促凋亡蛋白降解。在这种情况下,PARL 的变体通过凋亡影响细胞死亡,凋亡一直被认为是 LHON 神经退行性变的关键因素。

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本文引用的文献

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Genetic variation in PARL influences mitochondrial content.PARL 中的遗传变异会影响线粒体含量。
Hum Genet. 2010 Feb;127(2):183-90. doi: 10.1007/s00439-009-0756-0. Epub 2009 Oct 28.
2
Electrophysiological and histologic assessment of retinal ganglion cell fate in a mouse model for OPA1-associated autosomal dominant optic atrophy.OPA1 相关常染色体显性视神经萎缩小鼠模型中视网膜神经节细胞命运的电生理学和组织学评估。
Invest Ophthalmol Vis Sci. 2010 Mar;51(3):1424-31. doi: 10.1167/iovs.09-3606. Epub 2009 Oct 15.
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Gene-environment interactions in Leber hereditary optic neuropathy.
Graefes Arch Clin Exp Ophthalmol. 2021 Sep;259(9):2461-2472. doi: 10.1007/s00417-020-04993-1. Epub 2020 Nov 13.
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Mitochondrial disorders and the eye.线粒体疾病与眼睛
Eye Brain. 2011 Sep 26;3:29-47. doi: 10.2147/EB.S16192. eCollection 2011.
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Common variants in the PARL and PINK1 genes increase the risk to leprosy in Han Chinese from South China.PARL 和 PINK1 基因中的常见变异增加了华南汉族人群患麻风病的风险。
Sci Rep. 2016 Nov 23;6:37086. doi: 10.1038/srep37086.
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Common variants of the PINK1 and PARL genes do not confer genetic susceptibility to schizophrenia in Han Chinese.PINK1和PARL基因的常见变异不会使汉族人群对精神分裂症产生遗传易感性。
Mol Genet Genomics. 2015 Apr;290(2):585-92. doi: 10.1007/s00438-014-0942-1. Epub 2014 Oct 30.
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Profiling the mitochondrial proteome of Leber's Hereditary Optic Neuropathy (LHON) in Thailand: down-regulation of bioenergetics and mitochondrial protein quality control pathways in fibroblasts with the 11778G>A mutation.泰国莱伯遗传性视神经病变(LHON)线粒体蛋白质组分析:11778G>A突变的成纤维细胞中生物能量学和线粒体蛋白质质量控制途径的下调
PLoS One. 2014 Sep 12;9(9):e106779. doi: 10.1371/journal.pone.0106779. eCollection 2014.
8
Mitochondrial haplotypes may modulate the phenotypic manifestation of the LHON-associated ND1 G3460A mutation in Chinese families.线粒体单倍型可能会调节中国家系中与Leber遗传性视神经病变(LHON)相关的ND1基因G3460A突变的表型表现。
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Efficient mitochondrial biogenesis drives incomplete penetrance in Leber's hereditary optic neuropathy.高效的线粒体生物发生驱动了莱伯遗传性视神经病变的不完全外显率。
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New insights into mitochondrial fusion.线粒体融合的新见解。
FEBS Lett. 2007 May 22;581(11):2168-73. doi: 10.1016/j.febslet.2007.01.095. Epub 2007 Feb 20.