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生态学家的动物模型指南。

An ecologist's guide to the animal model.

机构信息

Wild Evolution Group, Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, EH9 3JT, UK.

出版信息

J Anim Ecol. 2010 Jan;79(1):13-26. doi: 10.1111/j.1365-2656.2009.01639.x.

DOI:10.1111/j.1365-2656.2009.01639.x
PMID:20409158
Abstract
  1. Efforts to understand the links between evolutionary and ecological dynamics hinge on our ability to measure and understand how genes influence phenotypes, fitness and population dynamics. Quantitative genetics provides a range of theoretical and empirical tools with which to achieve this when the relatedness between individuals within a population is known. 2. A number of recent studies have used a type of mixed-effects model, known as the animal model, to estimate the genetic component of phenotypic variation using data collected in the field. Here, we provide a practical guide for ecologists interested in exploring the potential to apply this quantitative genetic method in their research. 3. We begin by outlining, in simple terms, key concepts in quantitative genetics and how an animal model estimates relevant quantitative genetic parameters, such as heritabilities or genetic correlations. 4. We then provide three detailed example tutorials, for implementation in a variety of software packages, for some basic applications of the animal model. We discuss several important statistical issues relating to best practice when fitting different kinds of mixed models. 5. We conclude by briefly summarizing more complex applications of the animal model, and by highlighting key pitfalls and dangers for the researcher wanting to begin using quantitative genetic tools to address ecological and evolutionary questions.
摘要
  1. 理解进化和生态动态之间的联系的努力取决于我们衡量和理解基因如何影响表型、适应性和种群动态的能力。当种群内个体之间的亲缘关系已知时,数量遗传学提供了一系列理论和经验工具来实现这一目标。

  2. 最近的一些研究使用了一种称为动物模型的混合效应模型,来估计使用野外收集的数据得出的表型变异的遗传成分。在这里,我们为有兴趣在研究中探索应用这种数量遗传方法的生态学家提供了一个实用指南。

  3. 我们首先简单地概述了数量遗传学中的关键概念,以及动物模型如何估计相关的数量遗传参数,如遗传力或遗传相关性。

  4. 然后,我们提供了三个详细的示例教程,用于在各种软件包中实现动物模型的一些基本应用。我们讨论了与拟合不同类型混合模型相关的一些重要统计问题。

  5. 最后,我们简要总结了动物模型的更复杂应用,并强调了希望开始使用数量遗传工具来解决生态和进化问题的研究人员可能遇到的关键陷阱和危险。

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