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来自大肠杆菌的溶菌转糖基酶MltF的纯化、结晶及初步X射线衍射分析

Purification, crystallization and preliminary X-ray diffraction analysis of the lytic transglycosylase MltF from Escherichia coli.

作者信息

Madoori Pramod K, Thunnissen Andy Mark W H

机构信息

Department of Biophysical Chemistry, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands.

出版信息

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 May 1;66(Pt 5):534-8. doi: 10.1107/S1744309110010596. Epub 2010 Apr 29.

Abstract

The lytic transglycosylase MltF from Escherichia coli is an outer-membrane-bound periplasmic protein with two domains: a C-terminal catalytic domain with a lysozyme-like fold and an N-terminal domain of unknown function that is homologous to the periplasmic substrate-binding proteins of ABC transporters. In order to investigate its structure and function, a soluble form of full-length MltF (sMltF) containing both domains and a soluble fragment containing only the N-terminal domain (sMltF-NTD) were purified and crystallized. Crystals of sMltF belonged to space group P4(3)2(1)2 or P4(1)2(1)2, with unit-cell parameters a = b = 110.8, c = 163.5 A and one or two molecules per asymmetric unit. A complete data set was collected to 3.5 A resolution. Crystals of sMltF-NTD belonged to space group P3(1)21, with unit-cell parameters a = b = 82.4, c = 75.2 A and one molecule per asymmetric unit. For sMltF-NTD, a complete native data set was collected to 2.20 A resolution. In addition, for phasing purposes, a three-wavelength MAD data set was collected to 2.5 A resolution using a bromide-soaked sMltF-NTD crystal. Using phases derived from the Br-MAD data, it was possible to build a partial model of sMltF-NTD.

摘要

来自大肠杆菌的溶菌转糖基酶MltF是一种外膜结合的周质蛋白,具有两个结构域:一个具有溶菌酶样折叠的C末端催化结构域和一个功能未知的N末端结构域,该结构域与ABC转运蛋白的周质底物结合蛋白同源。为了研究其结构和功能,纯化并结晶了包含两个结构域的全长MltF的可溶形式(sMltF)和仅包含N末端结构域的可溶片段(sMltF-NTD)。sMltF的晶体属于空间群P4(3)2(1)2或P4(1)2(1)2,晶胞参数a = b = 110.8,c = 163.5 Å,每个不对称单元有一个或两个分子。收集了完整的数据集,分辨率达到3.5 Å。sMltF-NTD的晶体属于空间群P3(1)21,晶胞参数a = b = 82.4,c = 75.2 Å,每个不对称单元有一个分子。对于sMltF-NTD,收集了完整的天然数据集,分辨率达到2.20 Å。此外,为了相位确定,使用溴化物浸泡的sMltF-NTD晶体收集了分辨率为2.5 Å的三波长MAD数据集。利用从Br-MAD数据推导的相位,有可能构建sMltF-NTD的部分模型。

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