Department of Pathology, Stanford University School of Medicine, Stanford, CA 94305, USA.
J Mol Biol. 2010 Jul 9;400(2):137-44. doi: 10.1016/j.jmb.2010.05.005. Epub 2010 May 7.
The MLL (mixed-lineage leukemia) proto-oncogene encodes a histone methyltransferase that creates the methylated histone H3K4 epigenetic marks, commonly associated with actively transcribed genes. In addition to its canonical histone methyltransferase SET domain, the MLL protein contains three plant homeodomain (PHD) fingers that are well conserved between species but whose potential roles and requirements for MLL function are unknown. Here, we demonstrate that the third PHD domain of MLL (PHD3) binds histone H3 trimethylated at lysine 4 (H3K4me3) with high affinity and specificity and H3K4me2 with 8-fold lower affinity. Biochemical and structural analyses using NMR and fluorescence spectroscopy identified key amino acids essential for the interaction with H3K4me3. Site-directed mutations of the residues involved in recognition of H3K4me3 compromised in vitro H3K4me3 binding but not in vivo localization of full-length MLL to chromatin sites in target promoters of MEIS1 and HOXA genes. Whereas intact PHD3 finger was necessary for MLL occupancy at these promoters, H3K4me3 binding was critical for MLL transcriptional activity. These results demonstrate that MLL occupancy and target gene activation can be functionally separated. Furthermore, these findings reveal that MLL not only "writes" the H3K4me3 mark but also binds the mark, and this binding is required for the transcriptional maintenance functions of MLL.
MLL(混合谱系白血病)原癌基因编码一种组蛋白甲基转移酶,可产生甲基化的组蛋白 H3K4 表观遗传标记,通常与活跃转录的基因相关。除了其典型的组蛋白甲基转移酶 SET 结构域外,MLL 蛋白还包含三个植物同源结构域(PHD)手指,这些手指在物种间高度保守,但它们在 MLL 功能中的潜在作用和要求尚不清楚。在这里,我们证明 MLL 的第三个 PHD 结构域(PHD3)与赖氨酸 4 三甲基化的组蛋白 H3(H3K4me3)具有高亲和力和特异性结合,与 H3K4me2 的亲和力低 8 倍。使用 NMR 和荧光光谱学进行的生化和结构分析确定了与 H3K4me3 相互作用的关键氨基酸。涉及识别 H3K4me3 的残基的定点突变会损害体外 H3K4me3 结合,但不会损害全长 MLL 在 MEIS1 和 HOXA 基因靶启动子中染色质位点的体内定位。虽然完整的 PHD3 手指对于 MLL 在这些启动子上的占据是必要的,但 H3K4me3 结合对于 MLL 的转录活性至关重要。这些结果表明,MLL 的占据和靶基因的激活可以在功能上分开。此外,这些发现表明,MLL 不仅“写入”H3K4me3 标记,而且还结合该标记,并且这种结合对于 MLL 的转录维持功能是必需的。