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重复元件与拟南芥 DNA 甲基化图谱。

Repeat elements and the Arabidopsis DNA methylation landscape.

机构信息

Institut de Biologie de l'Ecole Normale Supérieure, Centre National de la Recherche Scientifique UMR8197, Institut National de La Recherche Médicale U1024, Paris, France.

出版信息

Heredity (Edinb). 2010 Jul;105(1):14-23. doi: 10.1038/hdy.2010.52. Epub 2010 May 12.

DOI:10.1038/hdy.2010.52
PMID:20461104
Abstract

DNA methylation is an epigenetic mark that has key roles in the control of genome activity in plants and mammals. It is critical for the stable silencing of repeat elements and is also involved in the epigenetic regulation of some genes. Despite similarities in the controlling functions of DNA methylation, its dynamics and deposition patterns differ in several respects between plants and mammals. One of the most striking differences is that plants tend to propagate pre-existing DNA methylation states across generations, whereas mammals re-establish them genome wide at every generation. Here, we review our current understanding of DNA methylation in the flowering plant Arabidopsis. We discuss in particular the role of RNAi in the incremental methylation and silencing of repeat elements over successive generations. We argue that paramutation, an epigenetic phenomenon first described in maize, is an extreme manifestation of this RNAi-dependent pathway.

摘要

DNA 甲基化是一种表观遗传标记,在植物和哺乳动物中对基因组活性的控制起着关键作用。它对于重复元件的稳定沉默至关重要,并且还参与一些基因的表观遗传调控。尽管 DNA 甲基化的控制功能相似,但在植物和哺乳动物之间,其动态和沉积模式在几个方面存在差异。最显著的差异之一是,植物倾向于在代际间传播预先存在的 DNA 甲基化状态,而哺乳动物则在每一代中重新建立它们的全基因组甲基化状态。在这里,我们回顾了我们目前对开花植物拟南芥中 DNA 甲基化的理解。我们特别讨论了 RNAi 在重复元件的逐步甲基化和沉默中的作用。我们认为,前突变是玉米中首次描述的一种表观遗传现象,是这种依赖于 RNAi 的途径的极端表现。

相似文献

1
Repeat elements and the Arabidopsis DNA methylation landscape.重复元件与拟南芥 DNA 甲基化图谱。
Heredity (Edinb). 2010 Jul;105(1):14-23. doi: 10.1038/hdy.2010.52. Epub 2010 May 12.
2
Role of transposable elements in heterochromatin and epigenetic control.转座元件在异染色质和表观遗传调控中的作用。
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3
A role for RNAi in the selective correction of DNA methylation defects.RNA干扰在DNA甲基化缺陷的选择性校正中的作用。
Science. 2009 Mar 20;323(5921):1600-4. doi: 10.1126/science.1165313. Epub 2009 Jan 29.
4
Paramutation's properties and puzzles.位置效应及其困惑。
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5
Two-step recruitment of RNA-directed DNA methylation to tandem repeats.RNA指导的DNA甲基化对串联重复序列的两步招募
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6
Genetic analysis of genomic methylation patterns in plants and mammals.植物和哺乳动物基因组甲基化模式的遗传分析。
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Gardening the genome: DNA methylation in Arabidopsis thaliana.耕耘基因组:拟南芥中的DNA甲基化
Nat Rev Genet. 2005 May;6(5):351-60. doi: 10.1038/nrg1601.
8
Genetic analyses of DNA methyltransferases in Arabidopsis thaliana.拟南芥中DNA甲基转移酶的遗传分析
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Widespread role for the flowering-time regulators FCA and FPA in RNA-mediated chromatin silencing.开花时间调控因子FCA和FPA在RNA介导的染色质沉默中具有广泛作用。
Science. 2007 Oct 5;318(5847):109-12. doi: 10.1126/science.1146565.
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The epigenetic landscape of plants.植物的表观遗传景观
Science. 2008 Apr 25;320(5875):489-92. doi: 10.1126/science.1153996.

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Paramutation at the maize pl1 locus is associated with RdDM activity at distal tandem repeats.玉米 pl1 基因座的位置改变与远端串联重复序列的 RdDM 活性有关。
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2
Dynamics of transposable element accumulation in the non-recombining regions of mating-type chromosomes in anther-smut fungi.转座元件在花药黑粉菌交配型染色体非重组区积累的动态。
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禾本科植物 microRNA156 及其靶基因 SQUAMOSA 启动子结合蛋白样(SPL)转录因子的全基因组分析。
J Zhejiang Univ Sci B. 2021 May 15;22(5):366-382. doi: 10.1631/jzus.B2000519.
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The epiallelic potential of transposable elements and its evolutionary significance in plants.转座元件的表等位基因潜能及其在植物进化中的意义。
Philos Trans R Soc Lond B Biol Sci. 2021 Jun 7;376(1826):20200123. doi: 10.1098/rstb.2020.0123. Epub 2021 Apr 19.
5
Locus-specific paramutation in Zea mays is maintained by a PICKLE-like chromodomain helicase DNA-binding 3 protein controlling development and male gametophyte function.玉米中特异座位的位置转变由一个类似 PICKLE 的染色质结构域螺旋酶 DNA 结合蛋白 3 维持,该蛋白控制着发育和雄性配子体的功能。
PLoS Genet. 2020 Dec 15;16(12):e1009243. doi: 10.1371/journal.pgen.1009243. eCollection 2020 Dec.
6
Engineering Tree Seasonal Cycles of Growth Through Chromatin Modification.通过染色质修饰构建树木季节性生长周期。
Front Plant Sci. 2019 Apr 5;10:412. doi: 10.3389/fpls.2019.00412. eCollection 2019.
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Global analysis of DNA methylation in young (J1) and senescent (J2) Gossypium hirsutum L. cotyledons by MeDIP-Seq.通过MeDIP-Seq对年轻(J1)和衰老(J2)的陆地棉子叶进行DNA甲基化的全局分析。
PLoS One. 2017 Jul 17;12(7):e0179141. doi: 10.1371/journal.pone.0179141. eCollection 2017.
8
Targeting of Arabidopsis KNL2 to Centromeres Depends on the Conserved CENPC-k Motif in Its C Terminus.拟南芥KNL2定位于着丝粒取决于其C端保守的CENPC-k基序。
Plant Cell. 2017 Jan;29(1):144-155. doi: 10.1105/tpc.16.00720. Epub 2017 Jan 6.
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