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通过密度泛函理论对结构相关的有机金属化合物对药物靶点组织蛋白酶 B 的抑制活性进行合理化。

Rationalization of the inhibition activity of structurally related organometallic compounds against the drug target cathepsin B by DFT.

机构信息

Institut des Sciences et Ingénierie Chimiques, Ecole Polytechnique Fédérale de Lausanne (EPFL), CH-1015 Lausanne, Switzerland.

出版信息

Dalton Trans. 2010 Jun 21;39(23):5556-63. doi: 10.1039/c003218b. Epub 2010 May 14.

DOI:10.1039/c003218b
PMID:20467693
Abstract

A series of organometallic compounds of general formula [(arene)M(PTA)(n)X(m)]Y (arene = eta(6)-C(10)H(14), eta-C(5)Me(5)); M = Ru(ii), Os(ii), Rh(iii) and Ir(iii); X = Cl, mPTA; Y = OTf, PF(6)) have been screened for their cytotoxicity and ability to inhibit cathepsin B in vitro, in comparison to the antimetastatic compound NAMI-A. The Ru and Os analogues and NAMI-A showed similar enzyme inhibition properties (with IC(50) values in the low muM range), whereas the Rh(iii) and Ir(iii) compounds were inactive. In order to build up a rational for the observed differences, DFT calculations of the metal complexes adducts with N-acetyl-l-cysteine-N'-methylamide, a mimic for the Cys residue in the cathepsin B active site, were performed to provide insights into binding thermodynamics in solution. Initial structure-activity relationships have been defined with the calculated binding energies of the M-S bonds correlating well with the observed inhibition properties of the compounds.

摘要

一系列通式为 [(arene)M(PTA)(n)X(m)]Y 的有机金属化合物(arene = eta(6)-C(10)H(14), eta-C(5)Me(5));M = Ru(ii), Os(ii), Rh(iii) 和 Ir(iii);X = Cl, mPTA;Y = OTf, PF(6))已被筛选用于体外细胞毒性和抑制组织蛋白酶 B 的能力,与抗肿瘤转移化合物 NAMI-A 进行比较。Ru 和 Os 类似物和 NAMI-A 表现出相似的酶抑制特性(IC(50) 值在低微摩尔范围内),而 Rh(iii) 和 Ir(iii) 化合物则没有活性。为了建立观察到的差异的合理依据,对金属配合物与 N-乙酰-l-半胱氨酸-N'-甲基酰胺的加合物进行了 DFT 计算,这是组织蛋白酶 B 活性部位 Cys 残基的模拟物,以提供对溶液中结合热力学的深入了解。已经定义了初步的结构-活性关系,计算出的 M-S 键的结合能与化合物的观察到的抑制特性很好地相关。

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