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线虫寄生虫基因:名字里有什么含义?

Nematode parasite genes: what's in a name?

机构信息

Institute of Parasitology, Macdonald Campus, McGill University, 21,111 Lakeshore Road, Ste Anne de Bellevue, Quebec, H9X 3V9, Canada.

出版信息

Trends Parasitol. 2010 Jul;26(7):334-40. doi: 10.1016/j.pt.2010.04.003. Epub 2010 May 17.

Abstract

The central theme of Shakespeare's Romeo and Juliet is that names are meaningless, artificial constructs, detached from any underlying reality. By contrast, we argue that a well chosen gene name can concisely convey a wealth of relevant biological information. A consistent nomenclature adds transparency that can have a real impact on our understanding of gene function. Currently, genes in parasitic nematodes are often named ad hoc, leading to confusion that can be resolved by adherence to a nomenclature standard adapted from Caenorhabditis elegans. We demonstrate this with ligand-gated ion-channels and propose that the flood of genome data and differences between parasites and the free living C. elegans will require modification of the standard.

摘要

莎士比亚的《罗密欧与朱丽叶》的主题是名字是无意义的、人为的构造,与任何潜在的现实都没有联系。相比之下,我们认为,一个经过精心选择的基因名称可以简洁地传达大量相关的生物学信息。一个一致的命名法增加了透明度,可以对我们理解基因功能产生实际影响。目前,寄生虫线虫中的基因通常是临时命名的,这导致了混乱,可以通过遵守从秀丽隐杆线虫改编的命名标准来解决。我们用配体门控离子通道来说明这一点,并提出随着基因组数据的大量涌现以及寄生虫与自由生活的秀丽隐杆线虫之间的差异,标准需要修改。

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