对微阵列数据分析做出明智的选择。 - Suppr

Suppr

超能文献

Making informed choices about microarray data analysis.

作者信息

Reimers Mark

机构信息

Department of Biostatistics, Virginia Commonwealth University, Richmond, Virginia, United States of America.

出版信息

PLoS Comput Biol. 2010 May 27;6(5):e1000786. doi: 10.1371/journal.pcbi.1000786.

DOI:10.1371/journal.pcbi.1000786

PMID:20523743

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2877726/

Abstract

摘要

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/549b/2877726/a8fee1539980/pcbi.1000786.g001.jpg

相似文献

Making informed choices about microarray data analysis.对微阵列数据分析做出明智的选择。

PLoS Comput Biol. 2010 May 27;6(5):e1000786. doi: 10.1371/journal.pcbi.1000786.

Combining literature text mining with microarray data: advances for system biology modeling.结合文献文本挖掘和微阵列数据：系统生物学建模的进展。

Brief Bioinform. 2012 Jan;13(1):61-82. doi: 10.1093/bib/bbr018. Epub 2011 Jun 15.

Advances in microarray data analysis and beyond.微阵列数据分析及其他领域的进展。

Int J Comput Biol Drug Des. 2010;3(2):89-90.

Glycomics meets genomics, epigenomics and other high throughput omics for system biology studies.糖组学与基因组学、表观基因组学和其他高通量组学一起用于系统生物学研究。

Curr Opin Chem Biol. 2013 Feb;17(1):34-40. doi: 10.1016/j.cbpa.2012.12.007. Epub 2013 Jan 1.

Systems analysis of high-throughput data.高通量数据的系统分析

Adv Exp Med Biol. 2014;844:153-87. doi: 10.1007/978-1-4939-2095-2_8.

Host-microbe interaction systems biology: lifecycle transcriptomics and comparative genomics.宿主-微生物相互作用系统生物学：生命周期转录组学和比较基因组学。

Future Microbiol. 2010 Feb;5(2):205-19. doi: 10.2217/fmb.09.125.

Deciphering molecular determinants of chemotherapy in gastrointestinal malignancy using systems biology approaches.利用系统生物学方法解析胃肠道恶性肿瘤化疗的分子决定因素。

Drug Discov Today. 2014 Sep;19(9):1402-9. doi: 10.1016/j.drudis.2014.04.016. Epub 2014 May 2.

Borrelia burgdorferi Microarray Analysis.伯氏疏螺旋体基因芯片分析

Methods Mol Biol. 2018;1690:115-126. doi: 10.1007/978-1-4939-7383-5_10.

Integrating high throughput technologies to advance genomic and proteomic research in South Africa.整合高通量技术以推动南非的基因组学和蛋白质组学研究。

Biotechnol J. 2008 Nov;3(11):1351-4. doi: 10.1002/biot.200800231.

The common ground of genomics and systems biology.基因组学与系统生物学的共同基础。

BMC Syst Biol. 2014;8 Suppl 2(Suppl 2):S1. doi: 10.1186/1752-0509-8-S2-S1. Epub 2014 Mar 13.

引用本文的文献

Synthesis of Silver Nano Particles Using Myricetin and the In-Vitro Assessment of Anti-Colorectal Cancer Activity: In-Silico Integration.使用杨梅素合成银纳米粒子及其体外评估抗结直肠癌活性的研究：计算机整合。

Int J Mol Sci. 2022 Sep 20;23(19):11024. doi: 10.3390/ijms231911024.

Multi-staged gene expression profiling reveals potential genes and the critical pathways in kidney cancer.多阶段基因表达谱分析揭示了肾癌中的潜在基因和关键途径。

Sci Rep. 2022 May 4;12(1):7240. doi: 10.1038/s41598-022-11143-6.

Gene Expression Profiling of Early Acute Febrile Stage of Dengue Infection and Its Comparative Analysis With Infection.登革热感染早期急性发热期的基因表达谱及其与感染的比较分析。

Front Cell Infect Microbiol. 2021 Oct 28;11:707905. doi: 10.3389/fcimb.2021.707905. eCollection 2021.

In-Silico Study of Immune System Associated Genes in Case of Type-2 Diabetes With Insulin Action and Resistance, and/or Obesity.2 型糖尿病胰岛素作用和抵抗及/或肥胖相关免疫系统基因的计算机模拟研究

Front Endocrinol (Lausanne). 2021 Apr 13;12:641888. doi: 10.3389/fendo.2021.641888. eCollection 2021.

Development of a Novel Diagnostic Biomarker Set for Rheumatoid Arthritis Using a Proteomics Approach.采用蛋白质组学方法开发类风湿关节炎新型诊断生物标志物集。

Biomed Res Int. 2018 Nov 26;2018:7490723. doi: 10.1155/2018/7490723. eCollection 2018.

Smooth quantile normalization.平滑分位数归一化

Biostatistics. 2018 Apr 1;19(2):185-198. doi: 10.1093/biostatistics/kxx028.

Differential expression of genes and differentially perturbed pathways associated with very high evening fatigue in oncology patients receiving chemotherapy.与接受化疗的肿瘤患者非常高的傍晚疲劳相关的基因差异表达和差异扰动途径。

Support Care Cancer. 2018 Mar;26(3):739-750. doi: 10.1007/s00520-017-3883-5. Epub 2017 Sep 25.

A comprehensive hybridization model allows whole HERV transcriptome profiling using high density microarray.一种全面的杂交模型允许使用高密度微阵列对整个内源性逆转录病毒转录组进行分析。

BMC Genomics. 2017 Apr 8;18(1):286. doi: 10.1186/s12864-017-3669-7.

Effects of temperature on transcriptome and cuticular hydrocarbon expression in ecologically differentiated populations of desert .温度对沙漠生态分化种群转录组和表皮碳氢化合物表达的影响

Ecol Evol. 2016 Dec 20;7(2):619-637. doi: 10.1002/ece3.2653. eCollection 2017 Jan.

E-Flux2 and SPOT: Validated Methods for Inferring Intracellular Metabolic Flux Distributions from Transcriptomic Data.E-Flux2和SPOT：从转录组数据推断细胞内代谢通量分布的验证方法。

PLoS One. 2016 Jun 21;11(6):e0157101. doi: 10.1371/journal.pone.0157101. eCollection 2016.

本文引用的文献

Getting started in gene expression microarray analysis.基因表达微阵列分析入门

PLoS Comput Biol. 2009 Oct;5(10):e1000543. doi: 10.1371/journal.pcbi.1000543. Epub 2009 Oct 30.

arrayQualityMetrics--a bioconductor package for quality assessment of microarray data.arrayQualityMetrics - 一个用于微阵列数据质量评估的生物导体软件包。

Bioinformatics. 2009 Feb 1;25(3):415-6. doi: 10.1093/bioinformatics/btn647. Epub 2008 Dec 23.

Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots.在来自虚假和真实调控热点的混杂因素影响下准确发现表达数量性状基因座。

Genetics. 2008 Dec;180(4):1909-25. doi: 10.1534/genetics.108.094201. Epub 2008 Sep 14.

SpliceCenter: a suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.剪接中心：一套基于网络的生物信息学应用程序，用于评估可变剪接对逆转录聚合酶链反应、RNA干扰、微阵列和基于肽的研究的影响。

BMC Bioinformatics. 2008 Jul 18;9:313. doi: 10.1186/1471-2105-9-313.

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays.RNA测序：技术可重复性评估及与基因表达阵列的比较

Genome Res. 2008 Sep;18(9):1509-17. doi: 10.1101/gr.079558.108. Epub 2008 Jun 11.

Clustering approaches to identifying gene expression patterns from DNA microarray data.从DNA微阵列数据中识别基因表达模式的聚类方法。

Mol Cells. 2008 Apr 30;25(2):279-88. Epub 2008 Mar 31.

An integrative genomic and epigenomic approach for the study of transcriptional regulation.一种用于转录调控研究的整合基因组学和表观基因组学方法。

PLoS One. 2008 Mar 26;3(3):e1882. doi: 10.1371/journal.pone.0001882.

Correction of technical bias in clinical microarray data improves concordance with known biological information.临床微阵列数据中技术偏差的校正提高了与已知生物学信息的一致性。

Genome Biol. 2008;9(2):R26. doi: 10.1186/gb-2008-9-2-r26. Epub 2008 Feb 4.

Techniques for clustering gene expression data.基因表达数据聚类技术。

Comput Biol Med. 2008 Mar;38(3):283-93. doi: 10.1016/j.compbiomed.2007.11.001. Epub 2007 Dec 3.

Capturing heterogeneity in gene expression studies by surrogate variable analysis.通过替代变量分析在基因表达研究中捕捉异质性。

PLoS Genet. 2007 Sep;3(9):1724-35. doi: 10.1371/journal.pgen.0030161. Epub 2007 Aug 1.

文献AI研究员

20分钟写一篇综述，助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型，支持多种主流文档格式。

立即体验