Department of Systematic Botany, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, Uppsala, Sweden.
Syst Biol. 2009 Jun;58(3):328-45. doi: 10.1093/sysbio/syp030. Epub 2009 Jul 3.
We used four potentially unlinked nuclear DNA regions from the gene family encoding the second largest subunit of the RNA polymerases, as well as the psbE-petG spacer and the rps16 intron from the chloroplast genome, to evaluate the origin of and relationships within Heliosperma (Sileneae, Caryophyllaceae). Relative dates of divergence times are used to discriminate between hybridization and gene duplication/loss as alternative explanations for topological conflicts between gene trees. The observed incongruent relationships among the three major lineages of Heliosperma are better explained by homoploid hybridization than by gene duplication/losses because species branching events exceed gene coalescence times under biologically reasonable population sizes and generation times, making lineage sorting an unlikely explanation. The origin of Heliosperma is complex and the gene trees likely reflect both reticulate evolution and sorting events. At least two lineages have been involved in the origin of Heliosperma, one most closely related to the ancestor of Viscaria and Atocion and the other to Eudianthe and/or Petrocoptis.
我们使用了编码 RNA 聚合酶第二大亚基的基因家族的四个可能不相关的核 DNA 区域,以及叶绿体基因组中的 psbE-petG 间隔区和 rps16 内含子,来评估 Heliosperma(石竹科 Sileneae)的起源和内部关系。相对分歧时间用于区分杂交和基因复制/缺失,因为基因树之间拓扑冲突的替代解释。Heliosperma 的三个主要谱系之间观察到的不一致关系,通过同源多倍体杂交得到了更好的解释,而不是通过基因复制/缺失,因为在合理的种群大小和世代时间下,物种分支事件超过了基因合并时间,使得谱系排序不太可能是原因。Heliosperma 的起源是复杂的,基因树可能反映了网状进化和排序事件。至少有两个谱系参与了 Heliosperma 的起源,一个与 Viscaria 和 Atocion 的祖先最密切相关,另一个与 Eudianthe 和/或 Petrocoptis 最密切相关。