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1H NMR 研究突变对脑膜炎奈瑟菌血红素加氧酶 C 端与活性部位相互作用的影响:对产物释放的影响。

1H NMR study of the influence of mutation on the interaction of the C-terminus with the active site in heme oxygenase from Neisseria meningitidis: implications for product release.

机构信息

Department of Chemistry, University of California, Davis, California 95616, USA.

出版信息

Biochemistry. 2010 Jul 20;49(28):5832-40. doi: 10.1021/bi1000867.

DOI:10.1021/bi1000867
PMID:20540495
Abstract

The HO from the pathogenic bacterium Neisseria meningitidis, NmHO, possesses C-terminal His207, Arg208, and His209 residues that are undetected in crystal structures. NMR found the C-terminus ordered and interacting with the active site and shown to undergo a spontaneous cleavage of the C-terminal Arg208-His209 bond that affects the product off rate. A preliminary model for the interaction based on the wild-type (WT) NmHO complexes has been presented [Liu, Y., Ma, L.-H., Satterlee, J. D., Zhang, X., Yoshida, T., and La Mar, G. N. (2006) Biochemistry 45, 3875-3886]. Two-dimensional (1)H NMR data of resting-state, azide-inhibited substrate complexes of the three C-terminal truncation mutants (Des-His209-, Des-Arg208His209-, and Des-His207Arg208His209-NmHO) confirm the previous proposed roles for His207 and Arg208 and reveal important additional salt bridges involving the His209 carboxylate and the side chains of both Lys126 and Arg208. Deletion of His209 leads to a qualitatively retained C-terminal geometry, but with increased separation between the C-terminus and active site. Moreover, replacing vinyls with methyls on the substrate leads to a decrease in the separation between the C-terminus and the active site. The expanded model for the C-terminus reveals a less stable His207-Arg208 cis peptide bond, providing a rationalization for its spontaneous cleavage. The rate of this spontaneous cleavage is shown to correlate with the proximity of the C-terminus to the active site, suggesting that the closer interaction leads to increased strain on the already weak His207-Arg208 peptide bond. The relevance of the C-terminus structure for in vitro studies, and the physiological function of product release, is discussed.

摘要

脑膜炎奈瑟菌致病因子 HO (NmHO)的 C 端具有组氨酸 207、精氨酸 208 和组氨酸 209 残基,这些残基在晶体结构中无法检测到。NMR 发现 C 端有序,并与活性位点相互作用,并显示出 C 端精氨酸 208-组氨酸 209 键的自发断裂,这会影响产物释放速率。已经提出了基于野生型(WT)NmHO 复合物的相互作用初步模型[Liu,Y.,Ma,L.-H.,Satterlee,J. D.,Zhang,X.,Yoshida,T.和 La Mar,G. N.(2006)生物化学 45,3875-3886]。三种 C 端截断突变体(Des-His209-,Des-Arg208His209-和 Des-His207Arg208His209-NmHO)的静息状态、叠氮化物抑制的底物复合物的二维(1)H NMR 数据证实了先前提出的 His207 和 Arg208 的作用,并揭示了涉及 His209 羧酸盐和赖氨酸 126 和精氨酸 208 侧链的重要额外盐桥。删除 His209 会导致 C 端几何形状发生定性保留,但 C 端与活性位点之间的分离增加。此外,在底物上用甲基取代乙烯基会导致 C 端与活性位点之间的分离减少。扩展的 C 端模型揭示了不太稳定的 His207-Arg208 顺式肽键,为其自发断裂提供了合理化解释。自发断裂的速率与 C 端与活性位点的接近程度相关,表明更紧密的相互作用会导致已经较弱的 His207-Arg208 肽键产生更大的应变。讨论了 C 端结构对体外研究和产物释放的生理功能的相关性。

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