Laboratory of Basic and Applied Molecular Biotechnology, Graduate School of Agriculture, Kyoto University, Uji, Kyoto, Japan.
J Basic Microbiol. 2010 Aug;50(4):311-7. doi: 10.1002/jobm.200900249.
The flagellar protein FlgJ, a member of glycoside hydrolase family 73, has N- and C-terminal domains that are responsible for flagellar rod assembly and peptidoglycan hydrolysis, respectively. The crystal structure of the C-terminal domain of SPH1045 (SPH1045-C), the FlgJ from Sphingomonas sp. strain A1, showed a long cleft formed by two lobes, alpha and beta. In this study, seven site-specific mutants of residues in the cleft were prepared and analyzed. Enzyme activity was reduced most significantly in mutants E185A and Y281A, followed by E224A. A comparison of the crystal structure of the inactive mutant E185A with that of other related enzymes revealed that Glu185 is structurally reasonable as the proton donor and that Tyr281 is close to Glu185. Glu224 is, however, far from the catalytic site, which is inconsistent with the decreased activity exhibited by E224A. The structural flexibility of Glu224 and its neighboring residues observed in SPH1045-C may indicate that this region is able to change its conformation upon substrate binding.
鞭毛蛋白 FlgJ 是糖苷水解酶家族 73 的成员,具有负责鞭毛杆组装和肽聚糖水解的 N 端和 C 端结构域。SPH1045(SPH1045-C)的 C 端结构域的晶体结构,来自鞘氨醇单胞菌菌株 A1 的 FlgJ,显示出由两个叶,α和β形成的长裂缝。在这项研究中,制备并分析了裂缝中残基的七个定点突变体。在突变体 E185A 和 Y281A 中,酶活性降低最显著,其次是 E224A。与其他相关酶的无活性突变体 E185A 的晶体结构比较表明,Glu185 作为质子供体在结构上是合理的,而 Tyr281 靠近 Glu185。然而,Glu224 远离催化位点,这与 E224A 表现出的活性降低不一致。在 SPH1045-C 中观察到 Glu224 及其相邻残基的结构灵活性可能表明该区域能够在底物结合时改变其构象。